View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_5 (Length: 830)
Name: NF0821_low_5
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 379 - 820
Target Start/End: Complemental strand, 34550027 - 34549582
Alignment:
| Q |
379 |
agcacgatcaaaacttatgccaaaaacttgtgtaaaccaaatccgtgagtctttgtaggtaactctgtaaacactctttgagccttgatgcataccctaa |
478 |
Q |
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| T |
34550027 |
agcacgatcaaaacttatgccaaaaacttgtgtaaaccaaatccgtgagcctttgtaggtaactctgtaaacactctttgagccttgatgcctaccctaa |
34549928 |
T |
|
| Q |
479 |
cccttgtgataattaaagtgctgt-----gcccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaactcat |
573 |
Q |
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| T |
34549927 |
cccttgtgataattaaagtgttgtggcccggccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaacttgt |
34549828 |
T |
|
| Q |
574 |
tattttgcatgttcctaggtcttacaaatttcagactcattcacaaaaccactctacccctgctttgattccatacctaccaaactcaaggtcttttctg |
673 |
Q |
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| T |
34549827 |
tatgttgcatgttcctaggtcttacaaatttcagactcattcactaaaccactctacccctgctttgattccatacctaccaaactcaaggtgttttctg |
34549728 |
T |
|
| Q |
674 |
cgaaggaaccatcaattaagttgggtggggatatccatcaatgtatatgaaacaagtgcgttaatcatcactatagctatcacaagggttagttaatgtg |
773 |
Q |
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| T |
34549727 |
cgaaggaaccatcaattaagttgggtggggatatccatcaatgtatatgaaacaa-tgcgttaatcatcattatagctatcacaagggttagttaatgtg |
34549629 |
T |
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| Q |
774 |
gttaaatttctcaactgatgtaacgaagttattagttagggtctctg |
820 |
Q |
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| T |
34549628 |
gttaaatttctcaactgatgtaacgaagttattagttagggtctctg |
34549582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 34550317 - 34550053
Alignment:
| Q |
30 |
gtcaagtgatctacgaagaggacgtggatgttgagaccaataatcaatattacccacgaaggaccaggtcaaatggtcactcatggaacacattcaggcc |
129 |
Q |
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| T |
34550317 |
gtcaagtgatctacgaagaggacgtggatgttgagaccaataatcaatattacccacgaaggaccaggtcaaatggtcactcatggaacacattcaggcc |
34550218 |
T |
|
| Q |
130 |
ataagcttgtttgatggttacttaacatgcaaggcaggatattttaacatataatcaccgatgtgtgtttgtattaattaaataaactcctgcttagcca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34550217 |
ataagcttgtttgatggttacttaacatgcaaggcaggatatcttaacatatgatcaccgatgtgtgtttgtattaattaaataaactcctgcttagcca |
34550118 |
T |
|
| Q |
230 |
gccgttattatgctatataaatcgtgtatcaataattaatgaagcatatctatatcatgtattaa |
294 |
Q |
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| T |
34550117 |
gccgttattatgttatatgaatcgtgtatcaataattaatgaagcatatttatatcatgtattaa |
34550053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 34546702 - 34546593
Alignment:
| Q |
245 |
tataaatcgtgtatcaataattaatgaagcatatctatatcatgta-ttaaattaatgaacatgtgatgaattattgtactatttgttgtttaaactttt |
343 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||| |||| | |||| |||||||| | |||||| ||||||||||| |
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| T |
34546702 |
tataaatcttgtatcaataattaatgaagcatatgaataacatgtatttaaattaattaacaagccatgagttattgtaatgtttgttttttaaactttt |
34546603 |
T |
|
| Q |
344 |
gttgttgaga |
353 |
Q |
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|||||||||| |
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| T |
34546602 |
gttgttgaga |
34546593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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