View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_50 (Length: 331)
Name: NF0821_low_50
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 2189279 - 2189027
Alignment:
| Q |
13 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2189279 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaacca |
2189180 |
T |
|
| Q |
113 |
actgccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaa |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2189179 |
actgccatatctcataatggccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaa |
2189080 |
T |
|
| Q |
213 |
acatacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2189079 |
acatacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
2189027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 36614163 - 36614415
Alignment:
| Q |
13 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36614163 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaacca |
36614262 |
T |
|
| Q |
113 |
actgccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaa |
212 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36614263 |
actgccatatctcataatggccgtttttagtattggaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaa |
36614362 |
T |
|
| Q |
213 |
acatacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
36614363 |
acatacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
36614415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 36647823 - 36648076
Alignment:
| Q |
13 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
36647823 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaagcattgagaagaataatcctcggaaacca |
36647922 |
T |
|
| Q |
113 |
actgccatatctcataatgg-ccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttcta |
211 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36647923 |
actgccatatctcataatgatccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttcta |
36648022 |
T |
|
| Q |
212 |
aacatacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36648023 |
aacatacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
36648076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 40224323 - 40224122
Alignment:
| Q |
75 |
ggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatctcataatgg-ccgtttttagaatttgaaa---------gcataacatcttc |
164 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||| | | ||| ||| || ||||||| |||||||| ||| | ||||||| |
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| T |
40224323 |
ggaaagctagcattgagaagaataatcctcggaaaccaactgccacaccccatgatgatccatttttagtatttgaaacttcttcaagcacagcatcttc |
40224224 |
T |
|
| Q |
165 |
aaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtggcagctcaa-catctccccattatcgaggccttctcccaag |
263 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||| |||||||| |
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| T |
40224223 |
agaatcattcctggactcattagagcaaatcactaagaatagttcgaaacatacaagtggcagctcaagcacctccccattattgaggcctcctcccaag |
40224124 |
T |
|
| Q |
264 |
cc |
265 |
Q |
| |
|
|| |
|
|
| T |
40224123 |
cc |
40224122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
| Q |
268 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51805610 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 40225442 - 40225379
Alignment:
| Q |
13 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatggg |
76 |
Q |
| |
|
||||| ||||||||||| |||||||||| | | ||||||||||||||| | |||||||||||| |
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| T |
40225442 |
aaaatcgcatgattttggtgacttcatgtctggctttggtggaagcagcgtttccaataatggg |
40225379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
| Q |
268 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| |
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|
| T |
20017454 |
agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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