View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_58 (Length: 319)
Name: NF0821_low_58
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_58 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 43777524 - 43777726
Alignment:
| Q |
22 |
atgaaatcggatcaa-tattacgaataacaatatatgagctatcaactatcatttaatagctaaccttttatgtttgcaaattttataacatcccttgac |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43777524 |
atgaaatcggatcaaatattacgaataacaatatctgagctatcaactattatttaatagctaaccttttatgtttgcaaattttataacatcccttgac |
43777623 |
T |
|
| Q |
121 |
gcaggaacgataatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctaca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
43777624 |
gcaggaacgataatgaaaaatgtctctgaaacatgttctagttaaacattcgaaacgacaattaataaaaaatgtcgaaaaagcatcagcttgagttaca |
43777723 |
T |
|
| Q |
221 |
act |
223 |
Q |
| |
|
||| |
|
|
| T |
43777724 |
act |
43777726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 43781181 - 43781269
Alignment:
| Q |
132 |
aatgaaaaatgtctctgaaacatgttctagttaagcattcgaaacgacaattaatcaaaaatgtcgaaaaagcatgagcttgagctacaact |
223 |
Q |
| |
|
|||| ||||||||||| ||||||||| | ||||| ||| ||| |||||| | ||| ||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
43781181 |
aatggaaaatgtctctaaaacatgttatcgttaaacatccgacacgacattcaat---aaatggcgaaaaagcatgaggttgagttacaact |
43781269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18159180 - 18159221
Alignment:
| Q |
25 |
aaatcggatcaatattacgaataacaatatatgagctatcaa |
66 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
18159180 |
aaatcggatcaatatcacgaataacaatatctgagctatcaa |
18159221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 419165 - 419206
Alignment:
| Q |
25 |
aaatcggatcaatattacgaataacaatatatgagctatcaa |
66 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
419165 |
aaatcgaatcaatatcacgaataacaatatctgagctatcaa |
419206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6547 times since January 2019
Visitors: 5768