View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_59 (Length: 317)

Name: NF0821_low_59
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_59
NF0821_low_59
[»] chr4 (14 HSPs)
chr4 (30-313)||(22200045-22200324)
chr4 (55-254)||(22185053-22185253)
chr4 (67-247)||(22166898-22167081)
chr4 (65-150)||(17219323-17219408)
chr4 (65-150)||(10666662-10666747)
chr4 (65-150)||(10880807-10880892)
chr4 (200-287)||(20941909-20941994)
chr4 (67-150)||(10717160-10717243)
chr4 (67-150)||(10930930-10931013)
chr4 (65-150)||(10709650-10709735)
chr4 (65-150)||(10923420-10923505)
chr4 (67-144)||(20321693-20321770)
chr4 (239-290)||(22166830-22166879)
chr4 (68-104)||(22318991-22319027)
[»] scaffold0512 (1 HSPs)
scaffold0512 (75-144)||(10749-10818)
[»] chr6 (1 HSPs)
chr6 (68-125)||(18736677-18736734)
[»] chr2 (1 HSPs)
chr2 (67-143)||(19898421-19898497)
[»] scaffold0054 (1 HSPs)
scaffold0054 (67-102)||(68092-68127)
[»] chr1 (1 HSPs)
chr1 (67-149)||(31917009-31917091)
[»] chr8 (1 HSPs)
chr8 (257-301)||(26884853-26884897)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 22200324 - 22200045
Alignment:
Q  30 agaaaatcgtgtgacataccacggtcatttgttaaagcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtt 129  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200324 agaaaatggtgtgacatactacggtcatttgttaaagcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtt 22200225  T
Q  130 tcttcctttgcatgttataaatnnnnnnngtttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacatttagga 229  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200224 tcttcctttgcatgttataaa--aaaaaagtttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacatttagga 22200127  T
Q  230 gttccacgtagtcatttataaaattgaaaaattaatattaaatatttctaatcaatatatcatatttatcccttcatctcactc 313  Q
    ||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  22200126 gttcctcgtagtcatttataaaattg--aaattaatattaaacatttctaatcaatatatcatatttatccctttatatcactc 22200045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 254
Target Start/End: Complemental strand, 22185253 - 22185053
Alignment:
Q  55 catttgttaaagcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaatnnn 154  Q
    ||||||||| | ||||||||  ||| ||||| || |||||| |||||||||| || ||||||| || | || ||| | |||||||||||||||||||       
T  22185253 catttgttacaacaagaaataaagacagaaatatgatcaaaacataaacacaaaattgaattttagtcgtatgttccatcctttgcatgttataaataaa 22185154  T
Q  155 nnnn-gtttgatccattttataactaaaaatttaatggttaactagcttcaattaaattttatttaacatttaggagttccacgtagtcatttataaaat 253  Q
         | ||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| |||| || | |||||||||||||||    
T  22185153 caaaagcttgatcccttttataactaaaaatttaatgtttaaatagcttcaactaaattttatttagcatttagtagttacaagaagtcatttataaaat 22185054  T
Q  254 t 254  Q
    |    
T  22185053 t 22185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 22167081 - 22166898
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaatnnnnnnn-gtttgat 165  Q
    ||||||||  ||| ||||| || |||||| |||||||||| || ||||||| || |||| ||| | |||||||||||||||||||        |||||||    
T  22167081 caagaaataaagacagaaatatgatcaaaacataaacacaaaattgaattttagtcatatgttccatcctttgcatgttataaataaacaaaagtttgat 22166982  T
Q  166 ccattttataactaaaaatttaatggtt--aactagcttcaattaaattttatttaacatttaggagttccacgtagtcattta 247  Q
    || |||||||||||||||||||||| |   || ||||||||||||||||||||||| |||||||||||| || | |||||||||    
T  22166981 cccttttataactaaaaatttaatgttctgaaatagcttcaattaaattttatttagcatttaggagttacaagaagtcattta 22166898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 17219408 - 17219323
Alignment:
Q  65 agcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    ||||||||||||||||| ||  || ||||||||||||||| | ||| ||||||||||||||  |||| ||||||||||| ||||||    
T  17219408 agcaagaaatggagaaaaaagaatgatcaaagcataaacataaaagagaatttgagccatatttttcctcctttgcatgatataaa 17219323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 10666662 - 10666747
Alignment:
Q  65 agcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    |||||||||||||||||  | ||| ||||||||||||||| | |||  ||||| |||||||  |||| ||||||||||| ||||||    
T  10666662 agcaagaaatggagaaaataggatgatcaaagcataaacataaaagataattttagccatatttttcctcctttgcatgatataaa 10666747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 10880807 - 10880892
Alignment:
Q  65 agcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    |||||||||||||||||  | ||| ||||||||||||||| | |||  ||||| |||||||  |||| ||||||||||| ||||||    
T  10880807 agcaagaaatggagaaaataggatgatcaaagcataaacataaaagataattttagccatatttttcctcctttgcatgatataaa 10880892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 20941994 - 20941909
Alignment:
Q  200 cttcaattaaattttatttaacatttaggagttccacgtagtcatttataaaattgaaaaattaatattaaatatttctaatcaatat 287  Q
    |||||||||||| || ||||||| ||| ||||| || |||| ||||||||||||||  |||||||| ||| || | ||||||||||||    
T  20941994 cttcaattaaatattttttaacacttaagagttacaggtagccatttataaaattg--aaattaatgttagatgtctctaatcaatat 20941909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 10717160 - 10717243
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    ||||||||||||||| || ||| | ||||||||||||| | ||  ||||||||||||||  |||| || |||||||| ||||||    
T  10717160 caagaaatggagaaaaaaggatgagcaaagcataaacataaaaaagaatttgagccatatttttcctcatttgcatgatataaa 10717243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 10930930 - 10931013
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    ||||||||||||||| || ||| | ||||||||||||| | ||  ||||||||||||||  |||| || |||||||| ||||||    
T  10930930 caagaaatggagaaaaaaggatgagcaaagcataaacataaaaaagaatttgagccatatttttcctcatttgcatgatataaa 10931013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 10709735 - 10709650
Alignment:
Q  65 agcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    |||||||||||||||||  | ||| ||||||||||||||| | |||   ||||||||||||  |||| || |||||||| ||||||    
T  10709735 agcaagaaatggagaaaataggatgatcaaagcataaacataaaagatgatttgagccatatttttcctcttttgcatgatataaa 10709650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 10923505 - 10923420
Alignment:
Q  65 agcaagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataaa 150  Q
    |||||||||||||||||  | ||| ||||||||||||||| | |||   ||||||||||||  |||| || |||||||| ||||||    
T  10923505 agcaagaaatggagaaaataggatgatcaaagcataaacataaaagatgatttgagccatatttttcctcttttgcatgatataaa 10923420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 20321770 - 20321693
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgt 144  Q
    |||||| ||||||||||||  | ||||||||| ||||| ||| | |||||||| ||||   |||||||||||||||||    
T  20321770 caagaattggagaaagaaaattgatcaaagcaaaaacaaatatgagaatttgacccatgtttttcttcctttgcatgt 20321693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 22166879 - 22166830
Alignment:
Q  239 agtcatttataaaattgaaaaattaatattaaatatttctaatcaatatatc 290  Q
    ||||||||||||||||||||  |||||||||||| ||| |||| ||||||||    
T  22166879 agtcatttataaaattgaaa--ttaatattaaatgtttttaattaatatatc 22166830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 22318991 - 22319027
Alignment:
Q  68 aagaaatggagaaagaaagataatcaaagcataaaca 104  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  22318991 aagaaacggagaaacaaagataatcaaagcataaaca 22319027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 10749 - 10818
Alignment:
Q  75 ggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgt 144  Q
    |||||||||||||||||||||||||||||| | | | |||| |||||||||  |||||||||||||||||    
T  10749 ggagaaagaaagataatcaaagcataaacaaacatgagaatgtgagccatatttttcttcctttgcatgt 10818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 18736734 - 18736677
Alignment:
Q  68 aagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccata 125  Q
    |||||||||| |||||||||| ||||||||||||||| ||| | ||| ||||||||||    
T  18736734 aagaaatggaaaaagaaagatgatcaaagcataaacaaatatgagaaattgagccata 18736677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 19898421 - 19898497
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatg 143  Q
    ||||| ||||||||| || ||| ||||||||||||||| | ||| ||||||||||||||  |||  |||||||||||    
T  19898421 caagagatggagaaaaaaggatgatcaaagcataaacataaaagagaatttgagccatattttttctcctttgcatg 19898497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 68092 - 68127
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaa 102  Q
    |||||||||||||||||||||||||||||| |||||    
T  68092 caagaaatggagaaagaaagataatcaaagaataaa 68127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 31917091 - 31917009
Alignment:
Q  67 caagaaatggagaaagaaagataatcaaagcataaacacataagtgaatttgagccataagtttcttcctttgcatgttataa 149  Q
    |||||||| |||||| |||||| ||||||||||||||| ||| | ||||||||  ||||  |||| |||||| ||||| ||||    
T  31917091 caagaaatagagaaataaagatgatcaaagcataaacaaatatgagaatttgaatcatatttttcctcctttccatgtaataa 31917009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 26884897 - 26884853
Alignment:
Q  257 aaaattaatattaaatatttctaatcaatatatcatatttatccc 301  Q
    ||||||||||| |||||| |||||||||||| |||| ||||||||    
T  26884897 aaaattaatataaaatatctctaatcaatatgtcatttttatccc 26884853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5701 times since January 2019
Visitors: 5758