View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_61 (Length: 308)
Name: NF0821_low_61
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 52967261 - 52967537
Alignment:
| Q |
18 |
aatcttttgacatttctcaaattccgatccttgtttgaatcccaaaaa-taacaagaactctttgcaactcctatgcatcaaacaaaaccatctttgttg |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52967261 |
aatcttttgacatttctcaaattctgatccttgtttgaaccccaaaaaatagcaagaactctttgcaactcctatgcatcaaacaaaaccatctttgttg |
52967360 |
T |
|
| Q |
117 |
tcatcaaaagccatcttcacctcctcaagtttggctcattctcctaaaacacttcacaaacctccttgaactatactttttctcaagtttctcacttact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52967361 |
tcatcaaaagccatcttcacctcctcaagtttggctcattctcctaaaacacttcacaaacctccttgaactatacttttactcaagtttctcacttact |
52967460 |
T |
|
| Q |
217 |
gagctgccaaaaaattccatattttccatcaacattttgacttcattaaagtctaaaaccttcttctctcccttaac |
293 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52967461 |
gagctgccaaaaaattccatattttccataaacattttgacttcattaaagtctaaaaccttcttctctcccttaac |
52967537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 52971153 - 52971405
Alignment:
| Q |
19 |
atcttttgacatttctcaaattccgatccttgtttgaatcccaaaaataacaagaactctttgcaactcctatgcatcaaacaaaaccatctttgttgt- |
117 |
Q |
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|||||||| || ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||||| | |
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| T |
52971153 |
atcttttggcagttctcaaattctgatccttgtttcaatcccaaaa-taacaagaactctttgcaactcctttgcatc-aataaaaccatctttgttctc |
52971250 |
T |
|
| Q |
118 |
--------catcaaaagccatcttcacctcct-caagtttggctcattctcctaaaacacttcacaaacctcctt-gaactatactttttctcaagtttc |
207 |
Q |
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|||||||||| ||||| ||||| ||| | ||||||||||| | |||||||||||||| |||||| |||| |||||||| ||||||| | |
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| T |
52971251 |
atcaaaaacatcaaaagcttgcttcaactcctccaaactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcc |
52971350 |
T |
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| Q |
208 |
tcacttactgagctgccaaaaaattccatattttccatcaacattttgacttcat |
262 |
Q |
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|| ||| ||||||||| ||||||| |||| |||||||||| |||||| ||||||| |
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| T |
52971351 |
tcgctttctgagctgcaaaaaaatcccattttttccatcaccattttcacttcat |
52971405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 2855922 - 2855799
Alignment:
| Q |
118 |
catcaaaagccatcttcacctcct-caagtttggctcattctcctaaaacacttcacaaacctcctt-gaactatactttttctcaagtttctcacttac |
215 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||| | ||||| |||| ||| |||||| |||||||| |||| ||||||| |||||| | |
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| T |
2855922 |
catcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcgaactatatttttcttcaagttcatcactttc |
2855823 |
T |
|
| Q |
216 |
tgagctgccaaaaaattccatatt |
239 |
Q |
| |
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|||||||| ||||| | ||||||| |
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| T |
2855822 |
tgagctgcaaaaaagtcccatatt |
2855799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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