View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_62 (Length: 306)

Name: NF0821_low_62
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_62
NF0821_low_62
[»] chr7 (3 HSPs)
chr7 (30-299)||(36714227-36714496)
chr7 (41-123)||(6651228-6651310)
chr7 (176-238)||(6651408-6651470)
[»] chr5 (4 HSPs)
chr5 (165-287)||(15567156-15567278)
chr5 (41-122)||(14050453-14050534)
chr5 (44-121)||(34152443-34152520)
chr5 (41-105)||(15567372-15567436)
[»] chr4 (4 HSPs)
chr4 (154-240)||(41972807-41972893)
chr4 (41-119)||(41972903-41972981)
chr4 (150-238)||(15992991-15993078)
chr4 (41-100)||(15993172-15993231)
[»] chr3 (2 HSPs)
chr3 (145-223)||(29541278-29541356)
chr3 (45-123)||(28727871-28727949)
[»] chr8 (2 HSPs)
chr8 (40-103)||(4780885-4780948)
chr8 (177-274)||(23772019-23772116)
[»] chr2 (4 HSPs)
chr2 (40-100)||(14815522-14815582)
chr2 (41-129)||(14461901-14461990)
chr2 (41-129)||(15089209-15089297)
chr2 (143-215)||(14461770-14461842)
[»] scaffold0001 (1 HSPs)
scaffold0001 (143-193)||(68203-68253)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 36714227 - 36714496
Alignment:
Q  30 tgtttatcgatatgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactcccccacca 129  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||    
T  36714227 tgtttatcgatatgggaagaatgaaacttccaaattcatctatcagccacaccaacctacaaaacaacaagtgacagctgttccgcagactccctcacca 36714326  T
Q  130 caccgtttgatgcccaccccaaagaaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttac 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36714327 caccgtttgatgcccaccctaaagaaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttac 36714426  T
Q  230 accaactaaccccgggtctttccaaaataaagtagaagccccatctcccacccgtctagtagtataatct 299  Q
    ||||||||| | |||||||||||||||||||||||||||||||||  ||||| |||||||| ||| ||||    
T  36714427 accaactaaacacgggtctttccaaaataaagtagaagccccatcctccacctgtctagtaatattatct 36714496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 6651228 - 6651310
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactccc 123  Q
    |||||||||||||| |||  ||||||| || | || |||||||| ||||||||||||||||||||  || |||| ||||||||    
T  6651228 atgggaagaatgaagcttttaaatccatctgtcagtcacaccaatctacaaaacaacaagtgacagttgctccgtacactccc 6651310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 6651408 - 6651470
Alignment:
Q  176 taatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaa 238  Q
    ||||||||||||| |||||| |||| ||||| |||||||||||||||| | ||||||| ||||    
T  6651408 taatttattaacagcaagatcaaactacctaacatatctaacatcaaaagatacaccatctaa 6651470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 15567278 - 15567156
Alignment:
Q  165 gcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaaccccgggtctttccaaaataaagtag 264  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||||||||| | |||| || ||||||  ||||| |||||||| |||||||    
T  15567278 gcaactgtggataatttattaacaaaaagagcaaacaacctaacatatctaacatcaaaagatacatcatctaaccatgggtccttccaaaacaaagtag 15567179  T
Q  265 aagccccatctcccacccgtcta 287  Q
    ||||| ||||| |||||||||||    
T  15567178 aagcctcatcttccacccgtcta 15567156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 14050534 - 14050453
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactcc 122  Q
    |||||||||||||| ||||||||| ||||| | || |||||||||||| |||| ||||||||||| ||| ||| ||||||||    
T  14050534 atgggaagaatgaagcttccaaattcacctgtcagtcacaccaacctataaaataacaagtgacagctgctccacacactcc 14050453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 34152443 - 34152520
Alignment:
Q  44 ggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactc 121  Q
    ||||||||||| ||||||||||||||| | |  ||||||||||| ||| ||||||||||| | ||| |||||||||||    
T  34152443 ggaagaatgaagcttccaaatccacctgtcattcacaccaacctgcaatacaacaagtgaaagctgctccgcacactc 34152520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 15567436 - 15567372
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgaca 105  Q
    ||||||||| |||||||||||||||||| | | || | ||||||||| |||||||||||||||||    
T  15567436 atgggaagattgaaacttccaaatccacatgttagtcgcaccaacctgcaaaacaacaagtgaca 15567372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 41972893 - 41972807
Alignment:
Q  154 aaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaacc 240  Q
    |||| ||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||    
T  41972893 aaaacatctccgcaactctgaataatttattgacaacaagatcaaacaacctagcatatctaacatcaaaaggtacaccatctaacc 41972807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 41972981 - 41972903
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacac 119  Q
    |||||||||||||| ||||||||||||| | | || ||||| ||||| ||||||||||||||||||||| ||| |||||    
T  41972981 atgggaagaatgaagcttccaaatccacatgtcagtcacacgaacctgcaaaacaacaagtgacaactgctccacacac 41972903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 15993078 - 15992991
Alignment:
Q  150 aaagaaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaa 238  Q
    |||||||| |||||  |||||||| |||||||| || |  |||||| ||||||| ||||||||||||||||||| | ||||||| ||||    
T  15993078 aaagaaaacatctccacaactgtggataatttacta-ctgcaagatcaaacaacttagcatatctaacatcaaaagatacaccatctaa 15992991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 15993231 - 15993172
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaag 100  Q
    ||||||| |||||| ||||||||||||||| | || ||||||||||| |||| |||||||    
T  15993231 atgggaataatgaagcttccaaatccacctgttagtcacaccaacctgcaaaccaacaag 15993172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 29541278 - 29541356
Alignment:
Q  145 accccaaagaaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatctaacatcaaa 223  Q
    ||||||||||||| |||||  |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  29541278 accccaaagaaaacatctccacaacagtgaataatttattaacagcaagatcaaacaacctagcatatctaacatcaaa 29541356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 28727949 - 28727871
Alignment:
Q  45 gaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactccc 123  Q
    |||||||||| ||||||||||||||  | || ||| ||||||| |||||| |||||||| | ||| || ||||||||||    
T  28727949 gaagaatgaagcttccaaatccaccagtcagacacgccaacctgcaaaaccacaagtgagagctgctctgcacactccc 28727871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 4780885 - 4780948
Alignment:
Q  40 tatgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtga 103  Q
    ||||||||||||||| ||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  4780885 tatgggaagaatgaagcttccaaatccacctgtcagacacatcaacctacaaaaccacaagtga 4780948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 23772116 - 23772019
Alignment:
Q  177 aatttattaacaacaagataaaacaacctagcatatctaacatcaaatgttacaccaactaaccccgggtctttccaaaataaagtagaagccccatc 274  Q
    |||||||||||  |||||| ||||||||||| |||||||||||| || | ||||| | | ||||  || ||  |||| ||||||| ||||||||||||    
T  23772116 aatttattaaccgcaagatcaaacaacctagtatatctaacatctaaagatacacaatccaaccaaggatccatccagaataaagaagaagccccatc 23772019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14815582 - 14815522
Alignment:
Q  40 tatgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaag 100  Q
    ||||||||||| ||| ||||||||||||| ||| || ||||||||||| ||||||||||||    
T  14815582 tatgggaagaaagaagcttccaaatccacatatcagtcacaccaacctgcaaaacaacaag 14815522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 14461990 - 14461901
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccaca-ccaacctacaaaacaacaagtgacaactgatccgcacactcccccacca 129  Q
    |||| ||||||||| |||| |||||||| | | || |||| |||||||||||||||| ||||||||  || ||||||||||||| |||||    
T  14461990 atggaaagaatgaagcttctaaatccacatttcagtcacatccaacctacaaaacaataagtgacagttgctccgcacactccctcacca 14461901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 15089297 - 15089209
Alignment:
Q  41 atgggaagaatgaaacttccaaatccacctataagccacaccaacctacaaaacaacaagtgacaactgatccgcacactcccccacca 129  Q
    ||||||||||| || |||||||| |||| |||  |  |||| ||||| ||||||||||||||||||||| |||  |||||||| |||||    
T  15089297 atgggaagaataaagcttccaaaaccacttatcggtaacacaaacctgcaaaacaacaagtgacaactgctccatacactccctcacca 15089209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 14461842 - 14461770
Alignment:
Q  143 ccaccccaaagaaaatatctctgcaactgtgaataatttattaacaacaagataaaacaacctagcatatcta 215  Q
    |||||| ||||| || |||||  ||| |||| ||||||||||||||  ||||| |||||||||| ||||||||    
T  14461842 ccaccctaaagagaacatctccacaattgtggataatttattaacaggaagatcaaacaacctatcatatcta 14461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 68203 - 68253
Alignment:
Q  143 ccaccccaaagaaaatatctctgcaactgtgaataatttattaacaacaag 193  Q
    ||||||||||| |||  |||| ||||||||| |||||||||||||||||||    
T  68203 ccaccccaaagcaaacgtctccgcaactgtggataatttattaacaacaag 68253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6854 times since January 2019
Visitors: 5772