View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_69 (Length: 293)

Name: NF0821_low_69
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_69
NF0821_low_69
[»] chr5 (3 HSPs)
chr5 (129-293)||(24092190-24092357)
chr5 (129-221)||(12842756-12842848)
chr5 (129-221)||(37023105-37023197)
[»] chr3 (7 HSPs)
chr3 (129-266)||(4099598-4099736)
chr3 (129-221)||(6806762-6806855)
chr3 (129-221)||(13719333-13719425)
chr3 (129-221)||(13723230-13723322)
chr3 (130-249)||(23619200-23619324)
chr3 (129-221)||(26137128-26137220)
chr3 (141-249)||(2185233-2185342)
[»] chr1 (6 HSPs)
chr1 (129-249)||(21010556-21010677)
chr1 (129-221)||(42375149-42375241)
chr1 (129-221)||(2790753-2790845)
chr1 (129-221)||(2797183-2797275)
chr1 (129-249)||(394922-395043)
chr1 (140-247)||(24567504-24567612)
[»] chr2 (3 HSPs)
chr2 (132-266)||(36314722-36314857)
chr2 (129-239)||(37758846-37758956)
chr2 (174-221)||(20925569-20925617)
[»] chr7 (5 HSPs)
chr7 (129-221)||(13160362-13160455)
chr7 (129-221)||(11708896-11708988)
chr7 (129-221)||(11716412-11716504)
chr7 (129-202)||(13166829-13166902)
chr7 (126-249)||(37063009-37063126)
[»] scaffold0015 (2 HSPs)
scaffold0015 (129-221)||(24389-24481)
scaffold0015 (129-221)||(29705-29797)
[»] chr8 (6 HSPs)
chr8 (129-221)||(91609-91701)
chr8 (129-221)||(86292-86384)
chr8 (129-221)||(29010960-29011052)
chr8 (129-221)||(19802763-19802855)
chr8 (129-174)||(34949358-34949403)
chr8 (168-245)||(26491902-26491980)
[»] chr6 (4 HSPs)
chr6 (129-221)||(16772644-16772736)
chr6 (129-221)||(32708034-32708126)
chr6 (129-221)||(16777980-16778072)
chr6 (129-191)||(32703666-32703727)
[»] chr4 (1 HSPs)
chr4 (129-221)||(14026836-14026930)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 24092357 - 24092190
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttctatt 227  Q
    |||||||||||||||||||||||||||||||||||||  | | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  24092357 tagactttgcagccaccaccctaccatgctagctttcctagttcaccaccctactattgacaataaggccaacaagccaccatgtttgacattttctatt 24092258  T
Q  228 tttactagattgtatttccattactatttcaactacc--atggcctctaggattactataaataaggc 293  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  24092257 tttactagattgtgtttccattactatttcaactaccatatggcctctaggattactataaataaggc 24092190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 12842756 - 12842848
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  12842756 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 12842848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 37023197 - 37023105
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||| ||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  37023197 tagattttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatatttgacattt 37023105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 4099598 - 4099736
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttctatt 227  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  4099598 tagactttgtagccaccaccctaccatgctagctttcctattccaccaccctactattgacaataaggccaacaagccaccatttttgacattttctatt 4099697  T
Q  228 tttactagattgtatttccattactatttcaactaccat 266  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  4099698 tttactagattgtgtttccattattatttcaactaccat 4099736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 6806855 - 6806762
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  6806855 tagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 6806762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 13719425 - 13719333
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  13719425 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccttactattgacaataaggccaacaagccaccatgtttgacattt 13719333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 13723322 - 13723230
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  ||| |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  13723322 tagactttgcagccaccaccctat-atgttagctttccaattccaccaccctactatttacaataaggccaacaagccaccatgtttgacattt 13723230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 23619200 - 23619324
Alignment:
Q  130 agactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacatt----ttct 224  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||||||| |||||| |||||  |||||| ||||||||| |||||||||||||    || |    
T  23619200 agactttgcggccaccaccctaccatgctagttttcccattccaccatcctactattgactttaaggcaaacaagccatcatgtttgacattatattttt 23619299  T
Q  225 atttttactagattgtatttccatt 249  Q
     ||||||||||||||| ||||||||    
T  23619300 ttttttactagattgtgtttccatt 23619324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 26137220 - 26137128
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    ||||||||||||||||||||||| |||||||||   ||| ||||||||||||||| |||||||||||||||||||| || ||| ||||||||||    
T  26137220 tagactttgcagccaccaccctatcatgctagcacccta-ttccaccaccctactattgacaataaggccaacaagtcaccatatttgacattt 26137128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 2185233 - 2185342
Alignment:
Q  141 ccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttctatttttactagattg 239  Q
    |||||||||||  |||| | |||||  |||||||||||||||| |||||  |||||| |||||| || ||||||||||  | |||||||||| |||||||    
T  2185233 ccaccaccctatgatgccaactttcccattccaccaccctactattgactttaaggcaaacaagtcatcatgtttgacgatatctatttttaatagattg 2185332  T
Q  240 tatttccatt 249  Q
    ||||||||||    
T  2185333 tatttccatt 2185342  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 21010677 - 21010556
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttctatt 227  Q
    |||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||    
T  21010677 tagactttgcagtcaccaccctaccatgctagctttccaatttcaccaccctactattgacaataaggccaacaagccaccatgtttgacaatatctatt 21010578  T
Q  228 tttactagattgtatttccatt 249  Q
    ||||||||||||| ||||||||    
T  21010577 tttactagattgtgtttccatt 21010556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 42375149 - 42375241
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  42375149 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 42375241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 2790845 - 2790753
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  2790845 tagactttgcagccaccaccctat-atgctagctttccaatttcaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 2790753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 2797275 - 2797183
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  2797275 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaataagccaccatgtttgacattt 2797183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 395043 - 394922
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttctatt 227  Q
    ||||||| |||| |||||| |||||||||| ||||||  |||||| ||| ||||| |||||  |||| | || |||||| ||||||||||| | ||||||    
T  395043 tagacttcgcagacaccactctaccatgctggctttcccattccatcactctactattgactttaagccaaataagccatcatgtttgacaatatctatt 394944  T
Q  228 tttactagattgtatttccatt 249  Q
    ||||||||||||| ||||||||    
T  394943 tttactagattgtgtttccatt 394922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 24567612 - 24567504
Alignment:
Q  140 gccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagccac-atgtttgacattttctatttttactagatt 238  Q
    ||||||| | ||||||||||| |||   |||||||||||||||| |||||  |||| | |||||||||| |||||||||| | |||||||||||||||||    
T  24567612 gccaccatcttaccatgctagtttttccattccaccaccctactattgactttaagccaaacaagccaccatgtttgacaatatctatttttactagatt 24567513  T
Q  239 gtatttcca 247  Q
    || ||||||    
T  24567512 gtgtttcca 24567504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 266
Target Start/End: Complemental strand, 36314857 - 36314722
Alignment:
Q  132 actttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttga-caataaggccaacaagccac-atgtttgacattttctatttt 229  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||| | |||| ||||||||||||||| |||| ||||||||||||||||||| |    
T  36314857 actttgcagccaccacc-taccatgctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgacattttctattat 36314759  T
Q  230 tactagattgtatttccattactatttcaactaccat 266  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36314758 tactagattgtgtttccattactatttcaactaccat 36314722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 37758846 - 37758956
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccacca-ccctactcttgacaataaggccaacaagcca-catgtttgacattttctat 226  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| |||||  ||| |||||||||||| ||||  ||||| | |||||    
T  37758846 tagactttgcagccaccaacctatcatgctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatg--tgacaatatctat 37758943  T
Q  227 ttttactagattg 239  Q
    |||||||||||||    
T  37758944 ttttactagattg 37758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 20925617 - 20925569
Alignment:
Q  174 ccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  20925617 ccaccctactattgacaataaggccaacaagccaccatgtttgacattt 20925569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 13160362 - 13160455
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcc-acatgtttgacattt 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||    
T  13160362 tagactttgcagccaccaccctaccatgctagctttccaattccaccaccctactattgaaaataaggccaacaagcctccatgtttgacattt 13160455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 11708896 - 11708988
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||    
T  11708896 tagactttgcagccaccaccctat-atgctagctttccaattccacaaccctattattgacaataaggccaacaagccaccatgtttgacattt 11708988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 11716412 - 11716504
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||  |||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||    
T  11716412 tagactttgcagccaccaccctat-atgctagcttttcaattccacaaccctattattgacaataaggccaacaagccaccatgtttgacattt 11716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 13166829 - 13166902
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaaca 202  Q
    |||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  13166829 tagaatttgcagccaccacgctaccatgctacctttccaattccaccaccctactattgacaataaggccaaca 13166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 37063009 - 37063126
Alignment:
Q  126 tcttagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattttct 224  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||      || ||||||||||| ||||||||||| | |||    
T  37063009 tcttagactttgcagccaccaccctaccatgctagctttcccattccatcaccctact-ttg------agaccaacaagccaccatgtttgacaatatct 37063101  T
Q  225 atttttactagattgtatttccatt 249  Q
    ||||||||| |||||| ||| ||||    
T  37063102 atttttactggattgtgttttcatt 37063126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 24481 - 24389
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  24481 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 24389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 29797 - 29705
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  29797 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 29705  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 91609 - 91701
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  91609 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 91701  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 86292 - 86384
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  86292 tagactttgcagctaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 86384  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 29011052 - 29010960
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  29011052 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactatcgacaataaggccaacaagccaccatgtttgacattt 29010960  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 19802763 - 19802855
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||| ||| ||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19802763 tagagttttcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 19802855  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 34949358 - 34949403
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccac 174  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||    
T  34949358 tagactttgcagccaccaccctacgatgctagctttttcattccac 34949403  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 26491980 - 26491902
Alignment:
Q  168 attccaccaccctactcttgacaataaggccaacaagccac-atgtttgacattttctatttttactagattgtatttc 245  Q
    |||| ||||||||||| ||||   |||||| |||||| ||| |||||||||| | ||||||||||||||||||| ||||    
T  26491980 attctaccaccctactgttgattttaaggcaaacaagtcaccatgtttgacaatgtctatttttactagattgtgtttc 26491902  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 16772736 - 16772644
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  16772736 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 16772644  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 32708034 - 32708126
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  32708034 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatgtttgacattt 32708126  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 16778072 - 16777980
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  16778072 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaataaggccaacaagccaccatatttgacattt 16777980  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 32703666 - 32703727
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccctactcttgacaa 191  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||||    
T  32703666 tagactttgcagccaccaccctat-atgctagctttccaattccaccaccctactattgacaa 32703727  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 14026836 - 14026930
Alignment:
Q  129 tagactttgcagccaccaccctaccatgctagctttctaattccaccaccc--tactcttgacaataaggccaacaagcca-catgtttgacattt 221  Q
    |||||||||||||||||||||||  |||||| ||||| |||||||||||||  |||| ||||||||||||||||||||||| ||||||||||||||    
T  14026836 tagactttgcagccaccaccctat-atgctaactttccaattccaccaccccctactattgacaataaggccaacaagccaccatgtttgacattt 14026930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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