View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_7 (Length: 685)
Name: NF0821_low_7
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 434 - 679
Target Start/End: Original strand, 37863450 - 37863695
Alignment:
| Q |
434 |
tatatattatttatctttactataacataatgtttaaaatatgtgaaatcaattttgcatcttccacatgaaaatccaacatatatgtacatgtgccgcc |
533 |
Q |
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| T |
37863450 |
tatatattatttatttttactataacataatgtttaaaatatgtgaaatcaattttgtatcttccacatgaaaatccaacatatatgtacatgtgccgca |
37863549 |
T |
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| Q |
534 |
acatgattggtgaaatccaaacacacaagtcagtatatagccctacatgattgaccagaattgaaagtcttgacaaaaacatatatgtactttaaaaagt |
633 |
Q |
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| T |
37863550 |
acatgatttgtgaaatccaaacacacaagtcattatatagccctacatgattgagcagaattgaaagtcttgacaaaaacatatatgtactttaaaaagt |
37863649 |
T |
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| Q |
634 |
ttcatgacctttcgtgttacacttgaccggtctatagaattatcta |
679 |
Q |
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| T |
37863650 |
ttcatgacctttcgtgttacacttgaccggtctatagagttatcta |
37863695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 200 - 438
Target Start/End: Original strand, 37863059 - 37863302
Alignment:
| Q |
200 |
gtgatattgatataaagtttccaccgtcacttagcggtgactaatctcactcgggagaacctctgcggcatacaaggtgtgttctcccctcccaaccaga |
299 |
Q |
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| T |
37863059 |
gtgatattggtatgaagtttccaccatcacttagcggtgactaatctcactcgggggaatctctgcggcatacaaggtgggttctcccctcccaaccaga |
37863158 |
T |
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| Q |
300 |
tttttccatatgtaggaatcattaatcgaacccctgaccacatgtttaaggagccaaaatccatttaccaccaatcttttgtatatttaaattaatgtg- |
398 |
Q |
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| T |
37863159 |
tttttctatatgtcggagccatgaatcgaacccctgaccacatatttaaggagccaaaatcc-cttaccaccattctattgtatatttaaattaatgtga |
37863257 |
T |
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| Q |
399 |
-----ttcaaccaatctattgttagtaaaaatccagaaagtatat |
438 |
Q |
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| T |
37863258 |
aactattcaaccaatctattgttagtaaaattccataaagtatat |
37863302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 39569417 - 39569498
Alignment:
| Q |
271 |
acaaggtgtgttctcccctcccaaccagatttttccatatgtaggaatcattaatcgaacccctgaccacatgtttaaggagc |
353 |
Q |
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| T |
39569417 |
acaaggtggattcttccctcacaaccatatttttccatatgcatgagtcatgaatcaaaccc-tgaccacatgtttaaggagc |
39569498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 500499 - 500527
Alignment:
| Q |
322 |
taatcgaacccctgaccacatgtttaagg |
350 |
Q |
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| T |
500499 |
taatcgaacccctgaccacatgtttaagg |
500527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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