View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_79 (Length: 267)
Name: NF0821_low_79
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_79 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 39477576 - 39477317
Alignment:
| Q |
8 |
acattattcttatttttaatttttgtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39477576 |
acattattcttatttttaatttttgtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtact |
39477477 |
T |
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| Q |
108 |
gcttttcttaatgattcaaaaaacctcataaagaccaacagaacttgagtacagaacatgctcaatcaatcctactaaaaaggtgtagtatcagataaaa |
207 |
Q |
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| T |
39477476 |
gcttttcttaatgattcaaaaaacctcataaagaccaacagaacttgagtacagaacatgctcaatcaatcctactaaaaaggtgtagtatcagataaaa |
39477377 |
T |
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| Q |
208 |
cagaaaagccaaaggaacacaatacagaaaaattctcaaaccagaaatcaaacagcaatc |
267 |
Q |
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| T |
39477376 |
caaaaaagccaaaggaatacaatacagaaaaattctcaaaccagaaatcaaacagcaatc |
39477317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 39485206 - 39485057
Alignment:
| Q |
20 |
tttttaatttttgtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtactgcttttcttaat |
119 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39485206 |
tttttaatttttgtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgcttttcttaat |
39485107 |
T |
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| Q |
120 |
gattcaaaaaacctcataaagaccaacagaacttgagtacagaacatgct |
169 |
Q |
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| T |
39485106 |
gatccaaaaaacttcataaagaccagcagaacttgagtacagaacatgct |
39485057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 39456659 - 39456709
Alignment:
| Q |
21 |
ttttaatttttgtatgtataatcaatttggttaagaatgaaaatgtaacag |
71 |
Q |
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|||| ||||||||||||| | ||||||||||||||||| ||| |||||||| |
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| T |
39456659 |
ttttgatttttgtatgtaaactcaatttggttaagaataaaattgtaacag |
39456709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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