View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0822_high_1 (Length: 466)
Name: NF0822_high_1
Description: NF0822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0822_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 36375609 - 36375144
Alignment:
| Q |
1 |
ttctcgcgctttcctctagtaaattaggcacttcctcctctagtttgccttttctgttcttagaatctaactcttccagaacttcgtgaataaattttgg |
100 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375609 |
ttctcgcgcgtgcctctagtaaatgaggcacttcctcctctagtttgcctcttctgtacttagaatctaactcttccagaacttcgtgaataaattttgg |
36375510 |
T |
|
| Q |
101 |
tctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccagaaagtaaaattctcaatgctgctggtagatccattaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375509 |
tctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccagaaagtaaaattctcaatgctgctggtagatccattaagcac |
36375410 |
T |
|
| Q |
201 |
ttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375409 |
ttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtg |
36375310 |
T |
|
| Q |
301 |
annnnnnnnnatcttctgttctcattaaggctaaaaatgaggaatagcccatgacaagaacactagggtgtgaattccagcttttgatctttcgtagaca |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36375309 |
aattttttttatcttctgttctcattaaggctaaaaatgaggaatagcccatgacaagaacactagggtgtgaattccagcttttgatcttttgtagaca |
36375210 |
T |
|
| Q |
401 |
atcaaaatcatgcttgacaccattagaatttgaaactccaggtagaaccactgattttggtgtcat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375209 |
atcaaaatcatgcttgacaccattagaatttgaaactccaggtagaaccactgattttggtgtcat |
36375144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 412
Target Start/End: Original strand, 8844457 - 8844806
Alignment:
| Q |
60 |
ttagaatctaactcttccagaacttcgtgaataaattttggtctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccag |
159 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||||||| |||||||| || || ||||| ||||| || |||||||| |||||||||||||||| |
|
|
| T |
8844457 |
ttagaatctaactctcgtagcacttcgtgaacaaattttggtcttgctaaacacagtgtattgaaatattcaccgaaattgttctgaaacaaagtgccag |
8844556 |
T |
|
| Q |
160 |
aaagtaaaattctcaatgctgctggtagatccattaagcacttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtcc |
259 |
Q |
| |
|
||||||| || |||||| ||| ||| || ||||||||||| ||||||||| ||||| | || |||||||||||||| || |||||||||||||||| ||| |
|
|
| T |
8844557 |
aaagtaatatcctcaattctgttggaagttccattaagcatttcctcaaccttgattttgtgcttctaggattgtgaccttcatcaagtatcaagattcc |
8844656 |
T |
|
| Q |
260 |
gggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatgaggaatagcccatgacaaga |
359 |
Q |
| |
|
|| ||||| | ||| | ||| ||| || ||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
8844657 |
agggctttctcgcaaagttttcgccatgtactttctgtgtgcaaattttgtatctt---gtctcattaaggctaaaaatgaagtgtagcccatgacaaga |
8844753 |
T |
|
| Q |
360 |
acactagggtgtgaattccagcttttgatctttcgtagacaatcaaaatcatg |
412 |
Q |
| |
|
||||| |||||||||| ||| |||| || |||| |||||||| ||| |||| |
|
|
| T |
8844754 |
acacttgggtgtgaatgccacttttttatttttccaagacaatccaaaacatg |
8844806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 284
Target Start/End: Complemental strand, 8823407 - 8823187
Alignment:
| Q |
64 |
aatctaactcttccagaacttcgtgaataaattttggtctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccagaaag |
163 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||| |||||||| | |||||||| ||||| | ||||||||| ||||| | |||||||||||| |
|
|
| T |
8823407 |
aatctaactctcgtagcacttcgtgaacaaattttggtcttgctaaacaaggtgtgttgaaatattcacaaaaattgttctgaaaaagagtgccagaaag |
8823308 |
T |
|
| Q |
164 |
taaaattctcaatgctgctggtagatccattaagcacttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtccggga |
263 |
Q |
| |
|
||| |||| ||| || ||| || ||||||||||| ||| | ||| ||||| | || ||||||||||| | | || ||||||||||||| ||| || |
|
|
| T |
8823307 |
taattttcttaattctattggaagttccattaagcatttctttaaccttgatttagtgcttctaggattataagcttcgtcaagtatcaagattccaggg |
8823208 |
T |
|
| Q |
264 |
ctttccctcaatgctttagcc |
284 |
Q |
| |
|
|||| ||||||| ||||||| |
|
|
| T |
8823207 |
atttctctcaatgttttagcc |
8823187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 60 - 464
Target Start/End: Original strand, 32249920 - 32250327
Alignment:
| Q |
60 |
ttagaatctaactcttccagaacttcgtgaataaattttggtctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccag |
159 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||| ||||| |||||||| || |||||||| ||||| | |||||||| |||||||| ||||||| |
|
|
| T |
32249920 |
ttagaatctaactcttgtagaacttcatgaacaaatttcggtctagctaaacaaagtgtgttgaaatattcacagaaattgttctgaaacaatgtgccag |
32250019 |
T |
|
| Q |
160 |
aaagtaaaattctcaatgctgctggtagatccattaagcacttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtcc |
259 |
Q |
| |
|
| || || ||||||||| ||| ||| || | |||||| || ||||||| | ||||| | || ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
32250020 |
agagcaatattctcaattctgttggaagtttcattaaacatttcctcagccttgatttagtgcttctaggattgtgtccttcatcaagtatcaagattcc |
32250119 |
T |
|
| Q |
260 |
gggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatgaggaatagcccatgacaaga |
359 |
Q |
| |
|
|| ||||| ||||||||||||||| || ||||||||| ||||| || ||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
32250120 |
agggctttctctcaatgctttagccatgtattttctgtgttcgaattttgtatcttttgatctcattaattgtaaaaatgaagtatagcccatgacaaga |
32250219 |
T |
|
| Q |
360 |
acactagggtgtgaattccagcttttg-atctttcgtagacaatcaaaatcatgcttgacaccattagaa---tttgaaactccaggtagaaccactgat |
455 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||||| | |||||||| ||| |||| |||||| || ||||| ||| || |||||| |||| || |||| |
|
|
| T |
32250220 |
acactagggtgtgagtgcca-cttttgtatcttgctgagacaatccaaaacatgtttgacatcactagaaggtcttggaaatccaggaagaatcattgat |
32250318 |
T |
|
| Q |
456 |
tttggtgtc |
464 |
Q |
| |
|
||||||||| |
|
|
| T |
32250319 |
tttggtgtc |
32250327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 32184727 - 32184532
Alignment:
| Q |
60 |
ttagaatctaactcttccagaacttcgtgaataaattttggtctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccag |
159 |
Q |
| |
|
|||||||||||||||| |||||||| | || | |||| ||||| ||||||| || |||| ||| ||||| | |||||||| | |||||| ||||||| |
|
|
| T |
32184727 |
ttagaatctaactcttgtagaacttcatcaacatatttcggtctacctaaacaaagtgtgtggaaatattcacagaaattgttctaaaacaatgtgccag |
32184628 |
T |
|
| Q |
160 |
aaagtaaaattctcaatgctgctggtagatccattaagcacttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaaga |
255 |
Q |
| |
|
||||||| ||||||||| ||| ||| || | |||||| | ||||||||| ||||| | || |||| | || |||| || | |||||||||||||| |
|
|
| T |
32184627 |
aaagtaatattctcaattctgttggaagtttcattaaatatttcctcaaccttgatttagtgcttcgatgactgtggcctttatcaagtatcaaga |
32184532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 274
Target Start/End: Original strand, 35959457 - 35959638
Alignment:
| Q |
93 |
aattttggtctggctaaacagagagtgttgaagtattccccaaaattgttttgaaacaaagtgccagaaagtaaaattctcaatgctgctggtagatcca |
192 |
Q |
| |
|
||||| ||||| || || || ||||||||||||||||| | ||||| |||||||||||||| || ||||| || ||||||||| | | | | | | || |
|
|
| T |
35959457 |
aatttcggtcttgccaagcatagagtgttgaagtattcgcagaaattattttgaaacaaagtaccggaaagcaatattctcaattcggtttgcactttca |
35959556 |
T |
|
| Q |
193 |
ttaagcacttcctcaactttgatgtggtacttctaggattgtgtccctcatcaagtatcaagagtccgggactttccctcaa |
274 |
Q |
| |
|
| || || || | |||| ||||| ||||||||||||| ||||| || |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
35959557 |
tcaaacattttcgcaaccttgatttggtacttctagggttgtgaccttcatcaagtaccaagagtccaggactttccctcaa |
35959638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1189 times since January 2019
Visitors: 5828