View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0822_low_3 (Length: 420)
Name: NF0822_low_3
Description: NF0822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0822_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 83 - 391
Target Start/End: Original strand, 11208700 - 11209008
Alignment:
| Q |
83 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
11208700 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag |
11208799 |
T |
|
| Q |
183 |
caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattg |
282 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11208800 |
caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgataaactattttggttgggttcactggtggtgtatacatcttccatattg |
11208899 |
T |
|
| Q |
283 |
gtcggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatctt |
382 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11208900 |
gtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatctt |
11208999 |
T |
|
| Q |
383 |
gaaactttt |
391 |
Q |
| |
|
||||||||| |
|
|
| T |
11209000 |
gaaactttt |
11209008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 83 - 391
Target Start/End: Original strand, 11169878 - 11170186
Alignment:
| Q |
83 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
11169878 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
11169977 |
T |
|
| Q |
183 |
caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgata-aactattttggttgggttcactggtggtgtatacatgttccatatt |
281 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||| ||| || | |||| ||| ||||| |||| |||||| || | |||| |||| |
|
|
| T |
11169978 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt |
11170076 |
T |
|
| Q |
282 |
ggtcggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatct |
381 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11170077 |
ggtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct |
11170176 |
T |
|
| Q |
382 |
tgaaactttt |
391 |
Q |
| |
|
|||||||||| |
|
|
| T |
11170177 |
tgaaactttt |
11170186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 391
Target Start/End: Original strand, 11275272 - 11275570
Alignment:
| Q |
93 |
taagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttt |
192 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||| || || || ||||| |||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
|
| Q |
193 |
tccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattggtcggaatcg |
292 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||| | | |||||||| ||| | | |||||| |||| | |||| | ||||| |||||| |
|
|
| T |
11275372 |
tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaatacttcttccttgttggtaggaatca |
11275471 |
T |
|
| Q |
293 |
tggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatcttgaaactttt |
391 |
Q |
| |
|
|||||||||| |||| |||| |||||| |||| || | |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11275472 |
tggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt |
11275570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 11155693 - 11155741
Alignment:
| Q |
177 |
tccaagcaagttgttttccttagttgtttgcctctcaccctcataaaca |
225 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||| ||||||||| |
|
|
| T |
11155693 |
tccaagcaagttgttttccctagttattttcctctcaccttcataaaca |
11155741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 11319866 - 11319834
Alignment:
| Q |
359 |
tgacttccctcaatgtcaaatcttgaaactttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11319866 |
tgacttccctcaatgtcaaatcttgaaactttt |
11319834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1091 times since January 2019
Visitors: 5825