View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0822_low_4 (Length: 397)
Name: NF0822_low_4
Description: NF0822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0822_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 133 - 369
Target Start/End: Original strand, 33830917 - 33831157
Alignment:
| Q |
133 |
agaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
232 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33830917 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33831016 |
T |
|
| Q |
233 |
tggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaa |
328 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33831017 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaa |
33831116 |
T |
|
| Q |
329 |
ctcagtaaaagaacccttaaacccttgcgtatggttaaggt |
369 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
33831117 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggt |
33831157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 133 - 369
Target Start/End: Original strand, 33893080 - 33893320
Alignment:
| Q |
133 |
agaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
232 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893080 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33893179 |
T |
|
| Q |
233 |
tggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaa |
328 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33893180 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaa |
33893279 |
T |
|
| Q |
329 |
ctcagtaaaagaacccttaaacccttgcgtatggttaaggt |
369 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
33893280 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggt |
33893320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 89 - 289
Target Start/End: Original strand, 33810698 - 33810898
Alignment:
| Q |
89 |
acctccaagttaagaacaaaagccttgtcacgaccaagaatggtagaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaa |
188 |
Q |
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||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
33810698 |
acctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaa |
33810797 |
T |
|
| Q |
189 |
ccctattcatgataacatacttgtccacatcatgaatccacccttggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttcttcac |
288 |
Q |
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|||||| ||||||| ||||||||||||||||| | | |||||||||| ||| ||||||| || ||| ||| ||||||||||||||||||||||||| |
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| T |
33810798 |
ccctatgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcac |
33810897 |
T |
|
| Q |
289 |
a |
289 |
Q |
| |
|
| |
|
|
| T |
33810898 |
a |
33810898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 89 - 289
Target Start/End: Original strand, 33870167 - 33870367
Alignment:
| Q |
89 |
acctccaagttaagaacaaaagccttgtcacgaccaagaatggtagaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaa |
188 |
Q |
| |
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||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
33870167 |
acctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaa |
33870266 |
T |
|
| Q |
189 |
ccctattcatgataacatacttgtccacatcatgaatccacccttggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttcttcac |
288 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| | | |||||||||| ||| ||||||| || ||| ||| ||||||||||||||||||||||||| |
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| T |
33870267 |
ccctatgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcac |
33870366 |
T |
|
| Q |
289 |
a |
289 |
Q |
| |
|
| |
|
|
| T |
33870367 |
a |
33870367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 24409006 - 24408875
Alignment:
| Q |
89 |
acctccaagttaagaacaaaagccttgtcacgaccaagaatggtagaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaa |
188 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||| ||||| | ||||||||||| |||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
24409006 |
acctccaagttaagaataatagccttctcacgaccgagaataacataggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaa |
24408907 |
T |
|
| Q |
189 |
ccctattcatgataacatacttgtccacatca |
220 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |
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| T |
24408906 |
ccctatgcatgatagcatacttgtccacatca |
24408875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 24410079 - 24410210
Alignment:
| Q |
89 |
acctccaagttaagaacaaaagccttgtcacgaccaagaatggtagaggggtaagagggcaagggatcaaggattctaagatcacgtgcatcaatatgaa |
188 |
Q |
| |
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|||||||| ||||||| || |||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
24410079 |
acctccaaattaagaataatagccttctcacgaccgagaataacagaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaa |
24410178 |
T |
|
| Q |
189 |
ccctattcatgataacatacttgtccacatca |
220 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |
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|
| T |
24410179 |
ccctatgcatgatagcatacttgtccacatca |
24410210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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