View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0822_low_5 (Length: 381)
Name: NF0822_low_5
Description: NF0822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0822_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 36375885 - 36375615
Alignment:
| Q |
30 |
gtattaacccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatc |
129 |
Q |
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| T |
36375885 |
gtattgacccgagtgttatcaaaagctcaacctcaagagagtaaccggtactgcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatc |
36375786 |
T |
|
| Q |
130 |
ggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375785 |
ggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcga |
36375686 |
T |
|
| Q |
230 |
agcacatctatacccttcattttttccgcatcaatattagagttaattttcttttcaatgttctccaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36375685 |
agcacatctatacccttcattttttccgcatcaatatttgagttaattttcttttcaatgttctccaagaa |
36375615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 32190113 - 32190354
Alignment:
| Q |
42 |
gtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcac |
141 |
Q |
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|||||||||||||| |||||||||||| ||||| || || ||||||||||||||||||| | | || |||||||||||||| |||| ||||| |
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| T |
32190113 |
gtgttatcaaaagcacaacctcaagaggataaccagtgcacttagccattttcttttgcagtttacgtaaaacttcgtgttgttcatcagatgtattcat |
32190212 |
T |
|
| Q |
142 |
gagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctata |
241 |
Q |
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||||| ||| |||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||| |||| | | ||||||||||| ||||||| |||| |
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| T |
32190213 |
gagcagtgtttagatttgtaaacctggaagagtatcagaagaatttccactgtcataaacatcgatgaaacgactagtgatttttcgcagcacatatata |
32190312 |
T |
|
| Q |
242 |
cccttcattttttccgcatcaatattagagttaattttcttt |
283 |
Q |
| |
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||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
32190313 |
cccttcattttttcctcatcaatatctgagttaaatttcttt |
32190354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 38 - 291
Target Start/End: Original strand, 32249587 - 32249840
Alignment:
| Q |
38 |
ccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcat |
137 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| || |||||||| |||||||| || ||||| ||||| | || |
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| T |
32249587 |
ccgagtgttatcaaaagctcaacctcaagagggtaactggtactctcggccattttcttctgaagtttctgtacaatctcatgctgttcgtcggacgtat |
32249686 |
T |
|
| Q |
138 |
tcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatc |
237 |
Q |
| |
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||| |||||||||||| ||||| ||||| |||||||| ||||||||| |||||| ||| || ||||| ||||||| ||||||||||| ||||||| |
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| T |
32249687 |
tcatgagcaatgtatatatttgtaaaccaggaagagtctcagaagaatttccactgtcgtacacatcaataaaactggaagtgatttttcgcagcacata |
32249786 |
T |
|
| Q |
238 |
tatacccttcattttttccgcatcaatattagagttaattttcttttcaatgtt |
291 |
Q |
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|| ||||| ||| || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
32249787 |
tagaccctgcatcttctcctcatcaatatccgagttaattttcttttcaatgtt |
32249840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 32185005 - 32184795
Alignment:
| Q |
87 |
ccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaact |
186 |
Q |
| |
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|||||||||| ||||||||||| | ||||| |||||||||||||| |||| | ||||| | ||||||||| || || ||||||||||||| || | |
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| T |
32185005 |
ccattttcttctgcagtttctgaa-aatcttatgttgttcatcggacacatttatgagcactttatagatttctaatcctaaaagagtatcagaataatt |
32184907 |
T |
|
| Q |
187 |
tccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctatacccttcattttttccgcatcaatattagagttaattttcttttca |
286 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||||||| | ||||||| || ||||| ||||||| || ||| | |||| | ||||||||||||| || |
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| T |
32184906 |
tccattttcataaacatcgatgaaaccactcatgatttt-cacagcacatatacaccctgcatttttccctcatga-tatttgcgttaattttctttgca |
32184809 |
T |
|
| Q |
287 |
atgttctccaagaa |
300 |
Q |
| |
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||||| |||||||| |
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| T |
32184808 |
atgttgtccaagaa |
32184795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 32192758 - 32192582
Alignment:
| Q |
36 |
acccgagtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgc |
135 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| ||||| |||||||||| |||| ||| || | |||| ||||||||||| | |||| |
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| T |
32192758 |
acccgagtgttatcaaaatttcaacctcaagagtataacttgtacacttagccattttcttctgcattttatgtaaaatcacgtgttgttcagcagatgt |
32192659 |
T |
|
| Q |
136 |
attcacgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaacc |
213 |
Q |
| |
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||||| ||||| | | |||||||| |||| || |||||||||| ||||| |||||| |||||||| ||| || ||||| |
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| T |
32192658 |
attcatgagcagtatttagatttgtaaactgg-aagagtatcataagaatttccactgtcataaagatcaatgaaacc |
32192582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 300
Target Start/End: Original strand, 8844130 - 8844389
Alignment:
| Q |
41 |
agtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattca |
140 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||| | |||||||||| ||||||||||| | |||||| | ||||||||| ||| ||||| |
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|
| T |
8844130 |
agtgttatcaaaagctctacctcaagagggtaaccagtacactcagccattttcttctgcagtttctgtaaaatctcaagctgttcatcgtatgtattca |
8844229 |
T |
|
| Q |
141 |
cgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctat |
240 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||| |||||||| ||| |||||| |||||||| ||||| |||| ||||||| ||||| ||||||| || |
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|
| T |
8844230 |
tgagcagtgtatatatttgtaaaccaggaagtgtatcagaggaatttccactttcataaacgtcgatgaaactgcttgtgatctttcgcagcacatgtag |
8844329 |
T |
|
| Q |
241 |
acccttcattttttccgcatcaatattagagttaattttcttttcaatgttctccaagaa |
300 |
Q |
| |
|
||||| ||||||||| |||| ||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
8844330 |
accctgcattttttcttcatcgttatctgagttaattttcctagcaatgttgtccaagaa |
8844389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 306
Target Start/End: Complemental strand, 8823738 - 8823473
Alignment:
| Q |
41 |
agtgttatcaaaagctcaacctcaagagagtaaccggtacagcccaccattttcttttgcagtttctgcacaatctcgtgttgttcatcggatgcattca |
140 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||| | ||||||||||||||||||| | | || ||| ||||||||||| | | |||| |
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|
| T |
8823738 |
agtgttatcaaaatctctacctcaagagagtaactggtacactcagccattttcttttgcagtttatatataacctcatgttgttcatcatacgtattcc |
8823639 |
T |
|
| Q |
141 |
cgagcaatgtatagatttgcaaaccgggaagagtatcagaagaacttccaccgtcataaacatcgataaaaccatttgtgatttttcgaagcacatctat |
240 |
Q |
| |
|
|| || |||||| ||||| ||||| ||| | |||||||||||| |||||| |||||||| ||||| |||| | ||||| ||| | |||||| || |
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| T |
8823638 |
tgaccagtgtataaatttgtaaaccaggaggtgtatcagaagaatttccactttcataaacgtcgatgaaactgctcgtgatcttttgcagcacaggtag |
8823539 |
T |
|
| Q |
241 |
acccttcattttttccgcatcaatattagagttaattttcttttcaatgttctccaagaataatct |
306 |
Q |
| |
|
||||| |||||||||| ||||| | | |||||||||||| | ||||||| |||| ||| ||||| |
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|
| T |
8823538 |
accctgcattttttcctcatcattgtgtgagttaattttcctagcaatgttttccatgaagaatct |
8823473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 35959222 - 35959260
Alignment:
| Q |
181 |
agaacttccaccgtcataaacatcgataaaaccatttgt |
219 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
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|
| T |
35959222 |
agaacttccagcttcataaacatcgataaaaccatttgt |
35959260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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