View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0822_low_9 (Length: 220)
Name: NF0822_low_9
Description: NF0822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0822_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 39379959 - 39380119
Alignment:
| Q |
1 |
agtagagattttacaggaagtaaggaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgttaacgat |
100 |
Q |
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| T |
39379959 |
agtagagattttacaggaagtaacgaaaggatctcggtgagaagatcgtcggagaaaaacagcggcgacggagttgtagtcatcgctgattgttaacgat |
39380058 |
T |
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| Q |
101 |
ttccaatgccaatgcaccttcgccggagtgttatattgaaccgttgaaattgtgaaatgag |
161 |
Q |
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| T |
39380059 |
ttccaatgccaatgcaccttcgccggagtgatatattgaactgttgaaagtgtgaaatgag |
39380119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3556862 - 3556769
Alignment:
| Q |
1 |
agtagagattttacaggaagtaaggaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgtt |
94 |
Q |
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| T |
3556862 |
agtagagatttcacagaaagtaatgaaaggatctcgacgaggagatcatcggagaagaacaccggcgacggaatcgtagacatggctgattgtt |
3556769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 1687249 - 1687317
Alignment:
| Q |
4 |
agagattttacaggaagtaaggaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacgga |
72 |
Q |
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| T |
1687249 |
agagatttcacagaaagtaatgaaaggatctcgacgaggagatcatcagagaagaacaccggcgacgga |
1687317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 3564874 - 3564787
Alignment:
| Q |
7 |
gattttacaggaagtaaggaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgtt |
94 |
Q |
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| T |
3564874 |
gattttacaggaagtaacgagaggatcacggcgaggagatcatcggagaagaacgccggcgatggacgagtagacatggctgattgtt |
3564787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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