View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0823_high_4 (Length: 405)
Name: NF0823_high_4
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0823_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 82 - 377
Target Start/End: Complemental strand, 47283378 - 47283083
Alignment:
| Q |
82 |
ccatataaatatcacccgcttacaacacaaggaacattttcatggatattgatccttctgcaaactgtccccaacttgtacggcaaagcacttggcttcg |
181 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47283378 |
ccatataaatatcaccagcttacaacacaaggaacattttcatggatattgatccttctgcaaactgtccccaacttgtacggcagagcacttggcttcg |
47283279 |
T |
|
| Q |
182 |
tgatgaccaatagttagaagcaactaccgttggatcacatccagaaagcttagtgagaaaagtgcttaaatcatattattacaagtgataaattcctttc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47283278 |
tgatgaccaatagttagaagcaactaccgttggatcacatccagaaagcttagtgagaaaagtgcttaaatcatattattacaagtgataaattcctttc |
47283179 |
T |
|
| Q |
282 |
aacaatatttgatcattgccttctgctcaaagttttaaagaatccacttcattgttaataattttttctattttacgtcgaagactgggttaatat |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47283178 |
aacaatatttgatcattgccttctgctcaaagttttaaagaatccacttcattgttaataattttttctattttacgtcgaagactgggttaatat |
47283083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 47283497 - 47283422
Alignment:
| Q |
9 |
agcacagacaaatattctttaaaaaataccaacttttatccactaggttgggtcaactacaaccaaatcttaacca |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47283497 |
agcacagacaaatattctttaaaaaataccaacttttatccactaggttgggtcaactacaaccaaatcttaacca |
47283422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 999 times since January 2019
Visitors: 5822