View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0823_high_6 (Length: 353)

Name: NF0823_high_6
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0823_high_6
NF0823_high_6
[»] chr1 (2 HSPs)
chr1 (1-282)||(41637919-41638209)
chr1 (250-282)||(13037792-13037824)
[»] chr6 (3 HSPs)
chr6 (254-353)||(725688-725787)
chr6 (250-282)||(29249402-29249434)
chr6 (250-282)||(31668795-31668827)
[»] scaffold0590 (1 HSPs)
scaffold0590 (250-282)||(1184-1216)
[»] scaffold0275 (1 HSPs)
scaffold0275 (250-282)||(2759-2791)
[»] chr8 (1 HSPs)
chr8 (250-282)||(8536158-8536190)
[»] chr7 (1 HSPs)
chr7 (250-282)||(7244630-7244662)
[»] chr5 (1 HSPs)
chr5 (250-282)||(20982245-20982277)
[»] chr4 (3 HSPs)
chr4 (250-282)||(2980581-2980613)
chr4 (250-282)||(4191667-4191699)
chr4 (250-282)||(47970246-47970278)
[»] chr3 (1 HSPs)
chr3 (250-282)||(41028961-41028993)
[»] chr2 (1 HSPs)
chr2 (250-282)||(3673735-3673767)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 41637919 - 41638209
Alignment:
Q  1 tggaagtgattcagatggacatgtgggtcccactccacgagcatttcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41637919 tggaagtgattcagatggacatgtgggtcccactccacgagcatttcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggt 41638018  T
Q  101 ggtcagaggtctagttactgtttcagnnnnnnncattt---------ctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaa 191  Q
    ||||||||||||||||||||||||||        ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41638019 ggtcagaggtctagttactgtttcagttttttttattttttttatttctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaa 41638118  T
Q  192 gagttaatcttgattatacttagaccctatttgggtaaacaactaaactataaatgtacatataagtgcttatgtattagctatttctata 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41638119 gagttaatcttgattatacttagaccctatttgggtaaacaactaaactataaatgtacatataagtgcttatgtattagctatttctata 41638209  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 13037792 - 13037824
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  13037792 catataagtgcttatgtataagctatttctata 13037824  T

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Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 254 - 353
Target Start/End: Complemental strand, 725787 - 725688
Alignment:
Q  254 taagtgcttatgtattagctatttctatagctnnnnnnnngtcaaactgtttttatataaactatatgttgtttttgtaacctattcgaaagagcttatg 353  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  725787 taagtgcttatgtattagctatttctatagctaaaaaaaagtcaaactgtttttatataaactatatgttgtttttgtaacctattcgaaagagcttatg 725688  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 29249402 - 29249434
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  29249402 catataagtgcttatgtatcagctatttctata 29249434  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 31668827 - 31668795
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  31668827 catataagtgcttatgtataagctatttctata 31668795  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 1216 - 1184
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  1216 catataagtgcttatgtataagctatttctata 1184  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 2759 - 2791
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  2759 catataagtgcttatgtataagctatttctata 2791  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 8536190 - 8536158
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  8536190 catataagtgcttatgtataagctatttctata 8536158  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 7244630 - 7244662
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  7244630 catataagtgcttatgtataagctatttctata 7244662  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 20982277 - 20982245
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  20982277 catataagtgcttatgtataagctatttctata 20982245  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 2980613 - 2980581
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  2980613 catataagtgcttatgtataagctatttctata 2980581  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 4191667 - 4191699
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  4191667 catataagtgcttatgtataagctatttctata 4191699  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 47970246 - 47970278
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  47970246 catataagtgcttatgtataagctatttctata 47970278  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 41028993 - 41028961
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    ||||||||||||||||||| |||||||||||||    
T  41028993 catataagtgcttatgtataagctatttctata 41028961  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 3673735 - 3673767
Alignment:
Q  250 catataagtgcttatgtattagctatttctata 282  Q
    |||||||||||||||||||||| ||||||||||    
T  3673735 catataagtgcttatgtattagttatttctata 3673767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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