View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0823_high_7 (Length: 342)
Name: NF0823_high_7
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0823_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 12596694 - 12596996
Alignment:
| Q |
29 |
agttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagatacagcagctgtgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596694 |
agttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagatacagcagctgtgt |
12596793 |
T |
|
| Q |
129 |
ttgttcttaaaatattttttacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaacatggactttt |
228 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596794 |
ttgttcttaaaatatttttaacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaacatggactttt |
12596893 |
T |
|
| Q |
229 |
tgtgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaatttccattcatgtggctt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596894 |
tgtgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaatttccattcatgtggctt |
12596993 |
T |
|
| Q |
329 |
cat |
331 |
Q |
| |
|
||| |
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| T |
12596994 |
cat |
12596996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 3313805 - 3313866
Alignment:
| Q |
29 |
agttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttctttt |
90 |
Q |
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|||||||||| ||||||||||||| |||||||||| ||||||| | |||||||||| |||| |
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| T |
3313805 |
agttgatgtactgaccgaccatactgtaagaatttatctacattgcattttgaatttatttt |
3313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 3392692 - 3392654
Alignment:
| Q |
45 |
gaccataccgtaagaatttctctacatcgtgttttgaat |
83 |
Q |
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||||||||||||||||||||||||||| || |||||||| |
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|
| T |
3392692 |
gaccataccgtaagaatttctctacattgtattttgaat |
3392654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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