View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0823_low_14 (Length: 251)
Name: NF0823_low_14
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0823_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 48431937 - 48431689
Alignment:
| Q |
3 |
tcgagtgagatgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagt |
102 |
Q |
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| T |
48431937 |
tcgagtgtaatgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagt |
48431838 |
T |
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| Q |
103 |
tattagcttttcaactgatcctttagaatttctaccagtttagcttctagagtatgtctttccttctacagattggttacatatctcctcttaagaaaaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48431837 |
tattagcttttcaactgatcctttagaatttctaccagtttagcttctagagtatgtctttccttctacagattggttacatatctcctcttaagaaaaa |
48431738 |
T |
|
| Q |
203 |
taaaatcgttattagtttgatctggtctcttttatacccaacgatgccc |
251 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
48431737 |
taaaatccttattagtttgatctggtctcttttatacccaacaatgccc |
48431689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 52808248 - 52808008
Alignment:
| Q |
12 |
atgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagttattagctt |
111 |
Q |
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||||||||||| |||||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
52808248 |
atgaattgtctggcaattggaaatgaaactccaggtttttgcatgaattgtttaaggaatgtcaaaatgaatcttaatcaagtaaactagttattagctt |
52808149 |
T |
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| Q |
112 |
ttcaactgatcctttagaatttctaccagtttagcttctagagtatgtctttcct---tctacagattggttacatatctcctcttaagaaaaataaaat |
208 |
Q |
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| || |||||||||||||| ||||||| ||||||||||||||||||| |||||| | || |||| |||||||||||||||| ||||||||||||| |
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| T |
52808148 |
tcaaattgatcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgattacatatctcctcttgagaaaaataaaat |
52808049 |
T |
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| Q |
209 |
cgttattagtttgatctggtctcttttatacccaacgatgc |
249 |
Q |
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| T |
52808048 |
ccatattagtttgatctggccccttctatacccaacaatgc |
52808008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 53286749 - 53286900
Alignment:
| Q |
15 |
aattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagttattagcttttc |
114 |
Q |
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| T |
53286749 |
aattgccttgctattggaattgaaactcctggtttctgcataagttgtataaggaatgacaagatgaatcgcagtcaagtaaactagatattagctttcc |
53286848 |
T |
|
| Q |
115 |
aactgatcctttagaatttctaccagtttagcttctagagtatgtctttcct |
166 |
Q |
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| T |
53286849 |
agttgatcctttagaatatctaccactttagcttctagagtatgtgtttcct |
53286900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 54139758 - 54139902
Alignment:
| Q |
3 |
tcgagtgagatgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagt |
102 |
Q |
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| T |
54139758 |
tcgagtgtaatgaattgtcttgctattggaattgaaactccggctttctgaataatttgtataaggaatgtcaaaatgaatcgcagtcaagtaaactagt |
54139857 |
T |
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| Q |
103 |
tattagcttttcaactgatcctttagaatttctaccagtttagct |
147 |
Q |
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| T |
54139858 |
tattagcgttccggttgatccttttgaatatctgccactttagct |
54139902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 1924243 - 1924293
Alignment:
| Q |
46 |
gtttctgcatgaattgttaaagg-aatgtcaaaatgaatcacaaccaagta |
95 |
Q |
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| T |
1924243 |
gtttctgcatgaattgtttaaggtaatgtcaaaatgaatcacaatcaagta |
1924293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 1924421 - 1924514
Alignment:
| Q |
138 |
cagtttagcttctagagtatgtctttccttctacagattggtt-----acatatctcctcttaagaaaaataaaatcgttattagtttgatctg |
226 |
Q |
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| T |
1924421 |
cagtttagcttctagagtatgtgtttcctcttacatatttgttgcgttacatatttcctcttgagaaaaatataattcttattagtttgatctg |
1924514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 23707176 - 23707415
Alignment:
| Q |
3 |
tcgagtgagatgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagt |
102 |
Q |
| |
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||||||| ||||||| ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
23707176 |
tcgagtgtaatgaattctcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagt |
23707275 |
T |
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| Q |
103 |
tattagcttttcaactgatcctttagaatttctaccagtttagcttctagagtatgtctttcct---tctacagattggttacatatctcctcttaagaa |
199 |
Q |
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|||||||||| ||| ||| ||||||| ||||||| ||||||||||||||||||| |||||| | || |||| |||||||||||||||| |||| |
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| T |
23707276 |
tattagctttccaattga--aattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatctcctcttgagaa |
23707373 |
T |
|
| Q |
200 |
aaataaaatcgttattagtttgatctggtctcttttataccc |
241 |
Q |
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| T |
23707374 |
acataaaatccttattagtttgatctggcctcttctataccc |
23707415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 11842939 - 11842835
Alignment:
| Q |
64 |
aaaggaatgtcaaaatgaatcacaaccaagtaaactagttattagcttttcaactgatcctttag--aatttctaccagtttagcttctagagtatgtct |
161 |
Q |
| |
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||||||||||||| |||||| || |||||||||||| |||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||||| | |
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| T |
11842939 |
aaaggaatgtcaagatgaattgcagtcaagtaaactagatattagctttccagttgatcctttagacaatatctaccactttagcttctagagtatgtgt |
11842840 |
T |
|
| Q |
162 |
ttcct |
166 |
Q |
| |
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||||| |
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|
| T |
11842839 |
ttcct |
11842835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 11843018 - 11842939
Alignment:
| Q |
3 |
tcgagtgagatgaattgtcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaa |
82 |
Q |
| |
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||||||| |||||||||||||| |||||||||| |||||| ||||||||||| | |||| |||||||||||||||||| |
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| T |
11843018 |
tcgagtgtaatgaattgtcttgctattggaattgaaactcctggtttctgcataagttgtataaggaatgtcaaaatgaa |
11842939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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