View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0823_low_4 (Length: 406)
Name: NF0823_low_4
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0823_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 1047053 - 1047419
Alignment:
| Q |
10 |
tcataggagtggtccttggaacggagttggatttagtggagcgcctatggagattgttacatcaactgttgtagttgcaagatccgtgaacaattcaaat |
109 |
Q |
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| T |
1047053 |
tcataggagtggtccttggaatggagttggatttagtggagcgcctatggagattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaat |
1047152 |
T |
|
| Q |
110 |
gaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccag |
209 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047153 |
gaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccag |
1047252 |
T |
|
| Q |
210 |
aggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctcc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
1047253 |
aggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtctataatcattgtggcccatatggaaattgcatttataacccgtctcc |
1047352 |
T |
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| Q |
310 |
aatatgtcaatgtttagatgggtttgagcctaaattgccacaaaattgggacgcatcaaattggaca |
376 |
Q |
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| T |
1047353 |
aatttgtcaatgtttagatgggtttgagcctaaatcaccacaaaattgggacgcatcaaattggaca |
1047419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 1071870 - 1072232
Alignment:
| Q |
14 |
aggagtggtccttggaacggagttggatttagtggagcgcctatggagattgttacatcaactgttgtagttgcaagatccgtgaacaattcaaatgaag |
113 |
Q |
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| T |
1071870 |
aggagtggtccttggaatggagttggatttagtggagcacctatggagattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaag |
1071969 |
T |
|
| Q |
114 |
tttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccagagga |
213 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1071970 |
tttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaacgcttagtcttcatgaacgcgttatatggagtccagagga |
1072069 |
T |
|
| Q |
214 |
caatacttggagtggtattgagtcagtaccaaaagataattgtgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctccaata |
313 |
Q |
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||| |||||||| | |||| |||||||||||||| || |||||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||| |
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| T |
1072070 |
caacacttggagcgatattcagtcagtaccaaaaaatgattgtgatgtctataatcgttgcggcccttatggaaattgcattcataacccgtctccaatt |
1072169 |
T |
|
| Q |
314 |
tgtcaatgtttagatgggtttgagcctaaattgccacaaaattgggacgcatcaaattggaca |
376 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
1072170 |
tgccaatgtttagatgggtttgagcctaaatcaccacaaaattggtacgcatcaaattggaca |
1072232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 1087527 - 1087893
Alignment:
| Q |
10 |
tcataggagtggtccttggaacggagttggatttagtggagcgcctatggagattgttacatcaactgttgtagttgcaagatccgtgaacaattcaaat |
109 |
Q |
| |
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|||||| | ||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||| ||||||| || ||| || ||||||||||||||| |
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| T |
1087527 |
tcatagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaat |
1087626 |
T |
|
| Q |
110 |
gaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccag |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||| |||| ||||| |
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| T |
1087627 |
gaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtgttaattggattccag |
1087726 |
T |
|
| Q |
210 |
aggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctcc |
309 |
Q |
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| ||| |||||||||||| ||||||||| | ||||||||| |||||||||||||||||| |||||| ||||||||||||||| || ||||| |||||| |
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| T |
1087727 |
aagacgatacttggagtgttattgagtcgttgccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaattgcgttcataacgagtctcc |
1087826 |
T |
|
| Q |
310 |
aatatgtcaatgtttagatgggtttgagcctaaattgccacaaaattgggacgcatcaaattggaca |
376 |
Q |
| |
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||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
1087827 |
aatttgccaatgtttagatgggtttgagcctaaatcgccaaaaaattgggacgcatcaaattggaca |
1087893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 1104083 - 1104446
Alignment:
| Q |
10 |
tcataggagtggtccttggaacggagttggatttagtggagcgcctatggagattgttacatcaactgttgtagttgcaagatccgtgaacaattcaaat |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || || || |||||| |||| | ||| | ||| || ||||||||| ||||| |
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| T |
1104083 |
tcataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaaatttgtgaacaatacaaat |
1104179 |
T |
|
| Q |
110 |
gaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccag |
209 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||| ||||| |
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| T |
1104180 |
gaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccag |
1104279 |
T |
|
| Q |
210 |
aggacaatacttggagtggtattgagtcagtaccaaaagataattgtgatgtctataatcattgtgggccttatggaaattgcatttataacccgtctcc |
309 |
Q |
| |
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| || ||| |||||| | | |||| |||||||| |||| ||||||||| |||||||| |||||| ||||||||||| || ||| ||| |||||| |
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| T |
1104280 |
aagataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattcctaatgagtctcc |
1104379 |
T |
|
| Q |
310 |
aatatgtcaatgtttagatgggtttgagcctaaattgccacaaaattgggacgcatcaaattggaca |
376 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||||||| |
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| T |
1104380 |
aatttgtcaatgtttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggaca |
1104446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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