View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0823_low_6 (Length: 357)

Name: NF0823_low_6
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0823_low_6
NF0823_low_6
[»] chr4 (7 HSPs)
chr4 (10-126)||(5170247-5170363)
chr4 (1-126)||(16312714-16312840)
chr4 (1-91)||(1996954-1997044)
chr4 (45-91)||(47378628-47378674)
chr4 (1-47)||(1995935-1995981)
chr4 (1-95)||(16314094-16314188)
chr4 (25-91)||(47862024-47862089)
[»] chr3 (11 HSPs)
chr3 (1-126)||(39605646-39605772)
chr3 (1-124)||(54672697-54672819)
chr3 (1-126)||(36437281-36437407)
chr3 (1-95)||(34799932-34800026)
chr3 (11-90)||(34825662-34825741)
chr3 (1-95)||(36438666-36438760)
chr3 (1-47)||(37085479-37085525)
chr3 (1-47)||(37086682-37086728)
chr3 (1-42)||(48165571-48165612)
chr3 (1-47)||(34801332-34801378)
chr3 (10-42)||(9239080-9239112)
[»] chr8 (4 HSPs)
chr8 (1-126)||(38973819-38973944)
chr8 (1-126)||(39004917-39005042)
chr8 (11-95)||(26521894-26521978)
chr8 (45-91)||(9310820-9310866)
[»] chr1 (5 HSPs)
chr1 (10-126)||(13970025-13970140)
chr1 (25-91)||(9010955-9011020)
chr1 (25-91)||(17242001-17242066)
chr1 (1-95)||(35712520-35712614)
chr1 (1-47)||(35713636-35713682)
[»] chr6 (7 HSPs)
chr6 (1-126)||(5858965-5859091)
chr6 (2-87)||(7538329-7538414)
chr6 (1-48)||(32146028-32146075)
chr6 (2-83)||(26545772-26545853)
chr6 (1-47)||(21382549-21382595)
chr6 (1-47)||(21383761-21383807)
chr6 (10-48)||(32145130-32145168)
[»] chr7 (6 HSPs)
chr7 (25-91)||(5737268-5737333)
chr7 (1-90)||(7849156-7849244)
chr7 (1-42)||(23526713-23526754)
chr7 (12-47)||(23525666-23525701)
chr7 (1-47)||(21262048-21262094)
chr7 (1-47)||(21263260-21263306)
[»] chr5 (3 HSPs)
chr5 (1-88)||(27491175-27491262)
chr5 (1-83)||(6376935-6377017)
chr5 (1-47)||(27490168-27490214)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-83)||(9855-9936)
[»] chr2 (4 HSPs)
chr2 (17-95)||(29043515-29043593)
chr2 (2-36)||(41659560-41659594)
chr2 (1-42)||(18775460-18775501)
chr2 (1-42)||(29042401-29042442)
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-126)||(28846-28967)
[»] scaffold0408 (1 HSPs)
scaffold0408 (4-48)||(10155-10199)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 5170363 - 5170247
Alignment:
Q  10 ttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgcataattaaggagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5170363 ttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgcataattaaggagg 5170264  T
Q  110 tggcatgctgacgtggc 126  Q
    |||||||||||||||||    
T  5170263 tggcatgctgacgtggc 5170247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 16312714 - 16312840
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| |||||||||| || ||||||| ||||| ||| ||||  |   ||| |||||||||||||| |||||||||||||||||| |||| | ||    
T  16312714 cttggagattcccccctgtaatataaagattccttggtgtacccccctaatgtcatctgactggattaatgagatgatgtggcacgctgactgtgtacta 16312813  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    ||||| ||||||||| |||||||||||    
T  16312814 attaaagaggtggcacgctgacgtggc 16312840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1997044 - 1996954
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    |||||||||| |||| ||||||||| |||||||||||||||| |||||||  |||| ||| ||||| |||  | | ||||||| |||||||    
T  1997044 cttggagattcccccttgtaaaatgtagattctttggtttacaccccccagtccatttgattggataaattagcttatgtggcgcgctgat 1996954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 47378674 - 47378628
Alignment:
Q  45 cccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||    
T  47378674 cccccaagctatatgactggattaatgagatgatgtggcacgctgat 47378628  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1995935 - 1995981
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  1995935 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 1995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16314188 - 16314094
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    |||||||||| |||| |||||||| |||||||||||||| || ||||  |   ||| ||||||||| | || |||||||||||  ||||||||||    
T  16314188 cttggagattcccccttgtaaaataaagattctttggttcacccccctaaggtcatctgactggataactgagatgatgtggcttgctgattgtg 16314094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 47862024 - 47862089
Alignment:
Q  25 gaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    |||||||||||||||||| || || ||||||| ||| |||||||||| | |||| ||||||||||||    
T  47862024 gaagattctttggtttacacctcc-aaaccatctgattggattaatgtggtgatttggcacgctgat 47862089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 39605646 - 39605772
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39605646 cttggagattcccccctgtaaaatgaagattctttggtttacaccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgcatta 39605745  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    |||||||||||||||||||||||||||    
T  39605746 attaaggaggtggcatgctgacgtggc 39605772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 54672697 - 54672819
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    ||||||||||||||  | |||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54672697 cttggagatttccca-tataaaatgaagattctttgatttacaccctc-aaaccatatgactggattaatgggatgatgtggcacgctgattgtgcacta 54672794  T
Q  100 attaaggaggtggcatgctgacgtg 124  Q
    ||||||||||| |||||||||||||    
T  54672795 attaaggaggttgcatgctgacgtg 54672819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 36437281 - 36437407
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| |||||||||| || ||||||| ||||| ||  ||||  |   | | |||||||||||||| |||||||||||||||||| |||| | ||    
T  36437281 cttggagattcccccctgtaatataaagattccttggtgtatccccctaatgtcttctgactggattaatgagatgatgtggcacgctgactgtgtacta 36437380  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    ||||| ||||||||| |||||||||||    
T  36437381 attaaagaggtggcacgctgacgtggc 36437407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 34799932 - 34800026
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    |||||||||| |||| || ||||||||||||||||||||||| ||||  |  |||| ||||||||| |||| ||||| |||||  ||||||||||    
T  34799932 cttggagattcccccttgcaaaatgaagattctttggtttacccccctaaggccatctgactggataaatgagatgacgtggcttgctgattgtg 34800026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 34825662 - 34825741
Alignment:
Q  11 tccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctga 90  Q
    ||||| ||||||||||| |||||||||||||| ||||  |   ||| |||||||||||||| | ||||||||||||||||    
T  34825662 tccccttgtaaaatgaaaattctttggtttacacccctgatgtcatttgactggattaatgagctgatgtggcacgctga 34825741  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 36438760 - 36438666
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    |||||||||| ||||||||||||| |||||||||||||| || ||||  |   ||| ||||||||| | || |||||||||||  ||||||||||    
T  36438760 cttggagattcccccctgtaaaataaagattctttggttcacccccctaaggtcatctgactggataactgagatgatgtggcttgctgattgtg 36438666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37085479 - 37085525
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  37085479 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37085525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37086728 - 37086682
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  37086728 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37086682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48165571 - 48165612
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttac 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  48165571 cttggagatttccccctgtaaaataaagattatttggtttac 48165612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34801378 - 34801332
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| |||||||| ||||||||||||||||| ||||    
T  34801378 cttggagattcccccttgtaaaataaagattctttggtttacccccc 34801332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 9239112 - 9239080
Alignment:
Q  10 ttccccctgtaaaatgaagattctttggtttac 42  Q
    |||||||||||||||||||||| ||||||||||    
T  9239112 ttccccctgtaaaatgaagattatttggtttac 9239080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 38973819 - 38973944
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  38973819 cttggagatt-ctcccggtaaaatgaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgtggcacgctgattgtgcatta 38973917  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    |||||||||||||||||||||||||||    
T  38973918 attaaggaggtggcatgctgacgtggc 38973944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 39004917 - 39005042
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  39004917 cttggagatt-ctcccggtaaaatgaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgtggcacgctgattgtgcatta 39005015  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    |||||||||||||||||||||||||||    
T  39005016 attaaggaggtggcatgctgacgtggc 39005042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 26521978 - 26521894
Alignment:
Q  11 tccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    ||||| |||||||||||||||||||||||||| ||||  |   ||| |||||||||||||| | |||||||||||||||| ||||    
T  26521978 tccccttgtaaaatgaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtg 26521894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 9310866 - 9310820
Alignment:
Q  45 cccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    ||||||| | |||||| |||||||||| |||||||||||||||||||    
T  9310866 cccccaagctatatgaatggattaatgagatgatgtggcacgctgat 9310820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 13970025 - 13970140
Alignment:
Q  10 ttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-taattaaggag 108  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  13970025 ttccccctgtaaaatgaagattctttggtttatacccc-caaaccatatgactggattaatgagatgatgtggcacgctgattgtgcactaattaaggag 13970123  T
Q  109 gtggcatgctgacgtggc 126  Q
    || ||| |||||||||||    
T  13970124 gttgca-gctgacgtggc 13970140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 9011020 - 9010955
Alignment:
Q  25 gaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  9011020 gaagattctttggtttacaccccc-aaaccatctgactggattaatgtgatgatgtggcacgctgat 9010955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17242066 - 17242001
Alignment:
Q  25 gaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    |||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  17242066 gaagattctttggtttacaccccc-aaaccatctgactagattaatgtgatgatgtggcacgctgat 17242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35712520 - 35712614
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||  |   ||| |||||||||||||| | ||||||| |||||||| ||||    
T  35712520 cttggagattcccccttgtaaaatgaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtgacacgctgactgtg 35712614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35713682 - 35713636
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||    
T  35713682 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35713636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 5858965 - 5859091
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| || ||||||| || ||||||| ||||| ||| ||||  |   ||| ||| |||||||||| |||||||||||||||||| |||||| ||    
T  5858965 cttggagattccctcctgtaatataaagattccttggtgtacccccctaatgtcatctgattggattaatgagatgatgtggcacgctgactgtgcacta 5859064  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    ||||| ||||||||| |||||||||||    
T  5859065 attaaagaggtggcaagctgacgtggc 5859091  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 7538329 - 7538414
Alignment:
Q  2 ttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgc 87  Q
    ||||||||| ||||  |||||||||||||||||||  |||| | ||  |  ||||||||||||||||||| |||||||||||||||    
T  7538329 ttggagattccccctcgtaaaatgaagattctttgagttacccgcctaaggccatatgactggattaatgagatgatgtggcacgc 7538414  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32146075 - 32146028
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccc 48  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  32146075 cttggagatttccccctgtaaaataaagattcattggtttacaccccc 32146028  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 26545853 - 26545772
Alignment:
Q  2 ttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggc 83  Q
    ||||||||| |||| |||||||| ||||||||||||||||| ||||  |  |||| ||||||||| |||| ||||| |||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccctaaggccatctgactggataaatgagatgacgtggc 26545772  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21382549 - 21382595
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  21382549 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 21382595  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21383807 - 21383761
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  21383807 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 21383761  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 32145130 - 32145168
Alignment:
Q  10 ttccccctgtaaaatgaagattctttggtttacgccccc 48  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  32145130 ttccccctgtaaaataaagattctttggtttacaccccc 32145168  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 5737268 - 5737333
Alignment:
Q  25 gaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgat 91  Q
    |||||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  5737268 gaagattctttggtttacacccc-caaaccatctgactagattaatgtgatgatgtggcacgctgat 5737333  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7849244 - 7849156
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctga 90  Q
    |||||||||| |||| ||||||||||||||||||||||||||  |||  |   ||| |||||||||||||| | |||| |||||||||||    
T  7849244 cttggagatt-ccccttgtaaaatgaagattctttggtttacatccctgatgtcatctgactggattaatgagttgatatggcacgctga 7849156  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23526754 - 23526713
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttac 42  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  23526754 cttggagattcccccctataaaatgaagattctttggtttac 23526713  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 23525666 - 23525701
Alignment:
Q  12 ccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23525666 ccccctgtaaaatgaagattctttggtttacacccc 23525701  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21262048 - 21262094
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  21262048 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 21262094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21263306 - 21263260
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  21263306 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 21263260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27491262 - 27491175
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgct 88  Q
    |||||||||| |||  |||||||||||||||||||||||||| ||||  |  |||| ||||||||| |||| | ||||||||||||||    
T  27491262 cttggagattccccattgtaaaatgaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgct 27491175  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6377017 - 6376935
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggc 83  Q
    |||||||||| || | |||||  | |||||||||||||||||  |||  | ||||||||||||||| ||||||||||||||||    
T  6377017 cttggagattccctcttgtaatttaaagattctttggtttacctccctaagaccatatgactggataaatgggatgatgtggc 6376935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27490168 - 27490214
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgcccc 47  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||    
T  27490168 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 27490214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9855 - 9936
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggc 83  Q
    |||||| ||| |||| |||||||| ||||||||||| ||||| ||||  | ||||| |||||||||||||| |||||||||||    
T  9855 cttggaaattcccccttgtaaaataaagattctttgatttac-cccctaagaccatctgactggattaatgagatgatgtggc 9936  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 29043593 - 29043515
Alignment:
Q  17 tgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtg 95  Q
    ||||||||||||||| |||||||||| |||   |   ||| |||||||||||||| | |||||||||||||||||||||    
T  29043593 tgtaaaatgaagattatttggtttacacccttgatgtcatctgactggattaatgagctgatgtggcacgctgattgtg 29043515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 41659560 - 41659594
Alignment:
Q  2 ttggagatttccccctgtaaaatgaagattctttg 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  41659560 ttggagattcccccctgtaaaatgaagattctttg 41659594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18775501 - 18775460
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttac 42  Q
    ||||||||||| |||| ||||||| |||||||||||||||||    
T  18775501 cttggagattttcccccgtaaaatcaagattctttggtttac 18775460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29042401 - 29042442
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttac 42  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  29042401 cttggagattcccccttgaaaaatgaagattctttggtttac 29042442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 28846 - 28967
Alignment:
Q  1 cttggagatttccccctgtaaaatgaagattctttggtttacgccccccaaaccatatgactggattaatgggatgatgtggcacgctgattgtgca-ta 99  Q
    |||||||||| |||||||||| || ||||||| ||||| ||| ||||  |   ||| |||||||||||||| ||||||||     ||||| |||||| ||    
T  28846 cttggagatt-ccccctgtaatataaagattccttggtgtacccccctaatgtcatctgactggattaatgagatgatgt----agctgactgtgcacta 28940  T
Q  100 attaaggaggtggcatgctgacgtggc 126  Q
    ||||| ||||||||| |||||||||||    
T  28941 attaaagaggtggcacgctgacgtggc 28967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 10155 - 10199
Alignment:
Q  4 ggagatttccccctgtaaaatgaagattctttggtttacgccccc 48  Q
    ||||||| |||||| |||||| ||||||||||||||||| |||||    
T  10155 ggagattcccccctataaaataaagattctttggtttaccccccc 10199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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