View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0823_low_9 (Length: 321)
Name: NF0823_low_9
Description: NF0823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0823_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 290
Target Start/End: Original strand, 30719564 - 30719822
Alignment:
| Q |
32 |
gaagccacatttcgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagc |
131 |
Q |
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| T |
30719564 |
gaagccacattttgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagc |
30719663 |
T |
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| Q |
132 |
gtttattcagctcctcttggttcctagaacaagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgcc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30719664 |
gtttattcagctcctcttggttcctagaacaagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgtgttccgcc |
30719763 |
T |
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| Q |
232 |
ggtgatgagagcagtgaatcccttgagggaccatcttgagcttctgctactgctctctg |
290 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719764 |
ggtgacgagagcagtgaatcccttgagggaccatcttgagcttctgctactgctctctg |
30719822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 30702013 - 30702266
Alignment:
| Q |
32 |
gaagccacatttcgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagc |
131 |
Q |
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|||||||| |||| || |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30702013 |
gaagccacttttctaacaagctcttctctttgagaagaagaagtcacatcacaaactgatccataaacagaaaaacctttctccttccactcatttaagc |
30702112 |
T |
|
| Q |
132 |
gtttattcagctcctcttggttcctagaacaagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgcc |
231 |
Q |
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| T |
30702113 |
atttattcaattcttcttcattcctagaacaagtgtacactatagcaccaaactcagcaagttcctctacgatagcatgaccgatcccacgagttccgcc |
30702212 |
T |
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| Q |
232 |
ggtgatgagagcagtgaatcccttgagggaccatcttgagcttctgctactgct |
285 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30702213 |
ggtgacaagagctgtgaatcccttgagggaccatcttgagcttctgcttctgct |
30702266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 30707209 - 30707454
Alignment:
| Q |
43 |
tcgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagc |
142 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
30707209 |
tcgaataagctcctctctttgagaaggagaagaagcatcacaaaccgatccatagacagaaaaacccttctctttccactcatttaagcatttattcagc |
30707308 |
T |
|
| Q |
143 |
tcctcttggttcctagaacaagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgccggtgatgagag |
242 |
Q |
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|| |||| |||||||| |||||| | |||||||||||||||||||| ||||| ||||| | |||||| ||||||||||| ||||| || || | |||| |
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| T |
30707309 |
tcttcttcattcctagagcaagtgaacactgtggcaccaaactcagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagag |
30707408 |
T |
|
| Q |
243 |
cagtgaatcccttgagggaccatcttgagcttctgctactgctctc |
288 |
Q |
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|||| ||||||||| ||||||||||||| ||| |||||||||| |
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| T |
30707409 |
cagtagttcccttgagagaccatcttgagcctctcatactgctctc |
30707454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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