View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_high_12 (Length: 251)
Name: NF0824_high_12
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 32837009 - 32837120
Alignment:
| Q |
140 |
tgtgcgatcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgct |
239 |
Q |
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| T |
32837009 |
tgtgcgatcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacacgctcagtcgct |
32837108 |
T |
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| Q |
240 |
catatggaagca |
251 |
Q |
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| T |
32837109 |
catatggaagca |
32837120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 32836881 - 32836983
Alignment:
| Q |
13 |
aatattatttaggcaaatgctacatatggcgaatccatcggaatacagcggcatgcatcgaacaataatcaatgaaattttagaaagcaaacggcatgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32836881 |
aatattatttaggcaaatgctacatatggcgaatccatcggaatacagtggcatgcatcgaacaataatcaatgaaattttagaaagcaaacggcatgaa |
32836980 |
T |
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| Q |
113 |
ctt |
115 |
Q |
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||| |
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| T |
32836981 |
ctt |
32836983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 19916486 - 19916390
Alignment:
| Q |
147 |
tcttgattattactgctcatgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgctcatatgg |
246 |
Q |
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| T |
19916486 |
tcttgattattcctgctcgtgattttctgcaagtatcgccaatgcttcaagctaa----aagttatcctgacatgcagatacgctcagtcgctcatatgg |
19916391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 19939752 - 19939672
Alignment:
| Q |
164 |
catgattttttgcaagtatcgccaacgcttcaagctaaaagtaagttatcctaacatgcagacatgctcagtcgctcatatggaa |
248 |
Q |
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| T |
19939752 |
catgattttctgcaactatcgccaacgcttcaagctaa----aagttatcctaacatacagacacgctcagtctctcatatggaa |
19939672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 19374658 - 19374628
Alignment:
| Q |
215 |
taacatgcagacatgctcagtcgctcatatg |
245 |
Q |
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| T |
19374658 |
taacatgcagacatgctcagtcgctcatatg |
19374628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 19916558 - 19916519
Alignment:
| Q |
73 |
aacaataatcaatgaaattttagaaagcaaacggcatgaac |
113 |
Q |
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| T |
19916558 |
aacaataatcaatgaaatttt-gaaagcaaatggcatgaac |
19916519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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