View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0824_high_13 (Length: 248)
Name: NF0824_high_13
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_high_13 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 4281472 - 4281708
Alignment:
| Q |
12 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgatagccgggctgatggagatgagaaattgag |
111 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4281472 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacactacacttcatttaccgataaccgggctgatggagatgagaaattgag |
4281571 |
T |
|
| Q |
112 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281572 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
4281671 |
T |
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| Q |
212 |
ccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4281672 |
ccaaaatatccattatcatactagattattgccaaaa |
4281708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 31710416 - 31710180
Alignment:
| Q |
12 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgatagccgggctgatggagatgagaaattgag |
111 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31710416 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacattccacttcatttaccgataaccgagctgatggagatgagaaattgag |
31710317 |
T |
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| Q |
112 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31710316 |
ttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
31710217 |
T |
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| Q |
212 |
ccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
31710216 |
ccaaaatatcaattatcatactagattattgccaaaa |
31710180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 14674713 - 14674550
Alignment:
| Q |
85 |
ccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaat |
184 |
Q |
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||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
14674713 |
ccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgtagtattaatgaaat |
14674614 |
T |
|
| Q |
185 |
cagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
14674613 |
cagggatgaatgtccaacctattgtctccaaaatatcaattatcatactagactattgccaaaa |
14674550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 20133873 - 20133967
Alignment:
| Q |
80 |
gatagccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagta |
174 |
Q |
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|||| ||||| ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
20133873 |
gataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagta |
20133967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 18974466 - 18974387
Alignment:
| Q |
169 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
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|
|||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18974466 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatttccaaaa |
18974387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 17535308 - 17535348
Alignment:
| Q |
92 |
gatggagatgagaaattgagttcgtttgttgaatcttgagg |
132 |
Q |
| |
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|||||||||||||||||||| | ||| |||||||||||||| |
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| T |
17535308 |
gatggagatgagaaattgagcttgttagttgaatcttgagg |
17535348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 17594919 - 17594762
Alignment:
| Q |
12 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgatagccgggctgatggagatgagaaattgag |
111 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
17594919 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacattccacttcatttaccgataaccaggctgatggagatgagaaattgag |
17594820 |
T |
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| Q |
112 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctg |
169 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
17594819 |
ttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg |
17594762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 19807219 - 19807298
Alignment:
| Q |
169 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
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|
|||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19807219 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatttccaaaa |
19807298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 8166058 - 8165820
Alignment:
| Q |
12 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttca-----------tttaccgatagccgggctgatggagat |
100 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||| ||||| || |||| || |
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| T |
8166058 |
cactgtcgatcagatcttcgtgacgtcgttggtgttgagagaaagccgcacattccacttccattccacttcctttaccgataaccgggttgttggaaat |
8165959 |
T |
|
| Q |
101 |
gagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtcca |
200 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||| |||| ||| ||||||||||||||| | ||||||||||| |
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| T |
8165958 |
gagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccct---tgtggtattaatgaaatcaagaatgaaggtcca |
8165862 |
T |
|
| Q |
201 |
acctattgtctccaaaatatccattatcatactagattattg |
242 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8165861 |
acctattgtctccaaaatatcaattatcatactagattattg |
8165820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 11203589 - 11203450
Alignment:
| Q |
80 |
gatagccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
179 |
Q |
| |
|
|||| ||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||| |
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| T |
11203589 |
gataaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtacaatacctttgctgtagtagtaat |
11203490 |
T |
|
| Q |
180 |
gaaatcagggatgaaggtccaacctattgtctccaaaata |
219 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||| |
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|
| T |
11203489 |
gaaatcaaggatgaaagtccaatctattgtctccagaata |
11203450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 12325891 - 12325739
Alignment:
| Q |
80 |
gatagccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
179 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | |
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|
| T |
12325891 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagt |
12325792 |
T |
|
| Q |
180 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
229 |
Q |
| |
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| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |
|
|
| T |
12325791 |
aatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca |
12325739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 47997 - 47845
Alignment:
| Q |
80 |
gatagccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
179 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| || | |
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|
| T |
47997 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgtagtagtagt |
47898 |
T |
|
| Q |
180 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
229 |
Q |
| |
|
| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |
|
|
| T |
47897 |
aatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca |
47845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 44358198 - 44358104
Alignment:
| Q |
80 |
gatagccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagta |
174 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
44358198 |
gataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagta |
44358104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 5331406 - 5331485
Alignment:
| Q |
169 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
248 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
5331406 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatcccttatcatactagattatttccaaaa |
5331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 343 - 383
Alignment:
| Q |
92 |
gatggagatgagaaattgagttcgtttgttgaatcttgagg |
132 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
343 |
gatggagatgagaaattgagtttgtttgttgaatcttgagg |
383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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