View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_high_7 (Length: 342)
Name: NF0824_high_7
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 15375108 - 15375413
Alignment:
| Q |
9 |
caacaatatgactatatttattttagaaactgatccaaaatttaaaaatgctgatcgaaatgattatcttatcaagagcgatcatatttttcagaagtgc |
108 |
Q |
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| T |
15375108 |
caacaaaatgactatatttattttggaaactgatccaaaatttaaaaatgttgatcgaaatgattatcttaccaagagcgatcatatttttcagaagtgc |
15375207 |
T |
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| Q |
109 |
aatcgttttactaaacctaaaaacgaagaatttctagctaagtgcgtagaaaaagtaggcattgattgtggagaagaaatattcggcaaattaattaatg |
208 |
Q |
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| T |
15375208 |
aatcgttttactgaacctgaaaacgaagaatttctagctaagtgcatagaaaaagtaggcattgattgtggagaagaaatattcagcaaattaattaatg |
15375307 |
T |
|
| Q |
209 |
ataagaaaataagtaaacattgttgcaaaaagcttgtgaaaacaggtgaaaaatgtcataccagtatggttcaggctttgattcgttcaccaacaatgag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15375308 |
ataagaaaataagtaaacattgttgcaaaaagcttgtgaaaacaggtgaaaaatgtcataccagtatggttcaggctttgattcgtacaccaacaatgag |
15375407 |
T |
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| Q |
309 |
gaatat |
314 |
Q |
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|||||| |
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| T |
15375408 |
gaatat |
15375413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 26713399 - 26713656
Alignment:
| Q |
49 |
tttaaaaatgctgatcgaaatgattatcttatcaagagcgatcatatttttcagaagtgcaatcgttttactaaacctaaaaacgaagaatttctagcta |
148 |
Q |
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| T |
26713399 |
tttaaaaatgcagatcgaaatgattatcttactaaaagtgatcatatttttcaaaagtgtgatcgtgttaccgaacctgaaaaccaaaaatttctagcca |
26713498 |
T |
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| Q |
149 |
agtgcgtagaaaaagtaggcattgattgtggagaagaaatattcggcaaattaattaatgataagaaaataagtaaacattgttgcaaaaagcttgtgaa |
248 |
Q |
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| T |
26713499 |
agtgtgtggaaaaaataggtgctgattgtggagatcaagtgtataacaacctgactcgtgatgggagcataacaaaacaatgttgcaaaaagctcgtgaa |
26713598 |
T |
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| Q |
249 |
aacaggtgaaaaatgtcataccagtatggttcaggctttgattcgttcaccaacaatg |
306 |
Q |
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||| ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |
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| T |
26713599 |
aaccggtgaaaaatgtcataccaatatggcaaaggctttgattcgtacaccagcaatg |
26713656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 26704653 - 26704819
Alignment:
| Q |
23 |
tatttattttagaaactgatccaaaatttaaaaatgctgatcgaaatgattatcttatcaagagcgatcatatttttcagaagtgcaatcgttttactaa |
122 |
Q |
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||||| |||| |||||||||||| || | |||||| ||||| | ||| |||||| |||||| |||||||||| ||||||| ||||| ||||| | |
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| T |
26704653 |
tattttttttggaaactgatccagtgttaagaaatgcagatcggattgagtatctttccaagagtgatcatatttacgagaagtgtgatcgtgttactca |
26704752 |
T |
|
| Q |
123 |
acctaaaaacgaagaatttctagctaagtgcgtagaaaaagtaggcattgattgtggagaagaaata |
189 |
Q |
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|||| || || |||||||||||||||||||| ||||| | ||| ||||||||||||| ||||| |
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| T |
26704753 |
acctgaagactctaaatttctagctaagtgcgtacaaaaaattggctctgattgtggagaacaaata |
26704819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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