View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0824_high_8 (Length: 302)

Name: NF0824_high_8
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0824_high_8
NF0824_high_8
[»] chr8 (13 HSPs)
chr8 (65-302)||(278912-279148)
chr8 (65-302)||(636704-636940)
chr8 (65-302)||(822507-822743)
chr8 (179-260)||(2623231-2623312)
chr8 (171-248)||(13231823-13231900)
chr8 (196-287)||(41456066-41456157)
chr8 (176-283)||(35558-35665)
chr8 (169-235)||(279736-279802)
chr8 (169-235)||(636050-636116)
chr8 (169-235)||(821853-821919)
chr8 (169-248)||(13231492-13231571)
chr8 (169-260)||(33231130-33231221)
chr8 (173-231)||(30204188-30204245)
[»] chr1 (9 HSPs)
chr1 (145-287)||(25476032-25476174)
chr1 (170-260)||(27702583-27702673)
chr1 (199-262)||(28651705-28651768)
chr1 (157-235)||(44633342-44633420)
chr1 (157-258)||(48621150-48621251)
chr1 (148-248)||(48621820-48621920)
chr1 (157-235)||(28652427-28652505)
chr1 (169-248)||(44634034-44634113)
chr1 (153-235)||(51795631-51795713)
[»] chr2 (7 HSPs)
chr2 (145-289)||(35063603-35063747)
chr2 (176-287)||(38356835-38356946)
chr2 (169-255)||(35064389-35064475)
chr2 (176-224)||(19601539-19601587)
chr2 (196-285)||(40056313-40056402)
chr2 (136-283)||(1299968-1300113)
chr2 (173-233)||(29453620-29453680)
[»] chr3 (8 HSPs)
chr3 (145-286)||(45004704-45004845)
chr3 (175-247)||(50766026-50766098)
chr3 (169-235)||(45145903-45145969)
chr3 (179-275)||(45005504-45005600)
chr3 (169-261)||(45146663-45146755)
chr3 (168-260)||(51489821-51489913)
chr3 (169-235)||(55350408-55350474)
chr3 (175-255)||(35744509-35744589)
[»] chr4 (11 HSPs)
chr4 (136-248)||(50071965-50072077)
chr4 (173-255)||(26305564-26305646)
chr4 (169-248)||(12007491-12007570)
chr4 (194-254)||(39631387-39631447)
chr4 (199-248)||(12007919-12007968)
chr4 (169-260)||(2486923-2487015)
chr4 (169-239)||(50071290-50071360)
chr4 (156-229)||(5473162-5473234)
chr4 (183-240)||(54628465-54628522)
chr4 (196-248)||(5474862-5474914)
chr4 (196-248)||(32641205-32641257)
[»] chr6 (5 HSPs)
chr6 (168-257)||(30921571-30921660)
chr6 (186-260)||(19109586-19109660)
chr6 (67-125)||(13476008-13476066)
chr6 (72-125)||(14020033-14020086)
chr6 (136-283)||(26670623-26670768)
[»] chr5 (10 HSPs)
chr5 (169-262)||(24153215-24153308)
chr5 (136-232)||(17115753-17115849)
chr5 (169-260)||(24153943-24154034)
chr5 (171-229)||(29108704-29108762)
chr5 (172-239)||(17116461-17116528)
chr5 (169-235)||(35145615-35145681)
chr5 (193-235)||(29265223-29265265)
chr5 (171-248)||(29264658-29264735)
chr5 (204-248)||(29108123-29108166)
chr5 (177-241)||(40816249-40816313)
[»] chr7 (4 HSPs)
chr7 (168-233)||(21516661-21516726)
chr7 (157-233)||(4833162-4833238)
chr7 (186-233)||(21516215-21516262)
chr7 (186-233)||(21516438-21516485)
[»] scaffold0301 (2 HSPs)
scaffold0301 (157-228)||(7855-7926)
scaffold0301 (176-232)||(6473-6529)
[»] scaffold0119 (1 HSPs)
scaffold0119 (136-283)||(26-171)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 302
Target Start/End: Complemental strand, 279148 - 278912
Alignment:
Q  65 agaagaaggtttgtcttttccaaattcaagaatcctgttaaaagttaacagaaaattttctnnnnnnnnttaaaattgaaggaaaatcaacagtgttaat 164  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||    
T  279148 agaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttctaaaaaaa-ttaaaattgaaggaaaattaacagtgttaat 279050  T
Q  165 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  279049 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcaca 278950  T
Q  265 agaggtgaatgttattttccctatatataaatgagata 302  Q
    |||| |||||||||||||||||||||||||||||||||    
T  278949 agagatgaatgttattttccctatatataaatgagata 278912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 302
Target Start/End: Original strand, 636704 - 636940
Alignment:
Q  65 agaagaaggtttgtcttttccaaattcaagaatcctgttaaaagttaacagaaaattttctnnnnnnnnttaaaattgaaggaaaatcaacagtgttaat 164  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||    
T  636704 agaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttctaaaaaaa-ttaaaattgaaggaaaattaacagtgttaat 636802  T
Q  165 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  636803 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcaca 636902  T
Q  265 agaggtgaatgttattttccctatatataaatgagata 302  Q
    |||| |||||||||||||||||||||||||||||||||    
T  636903 agagatgaatgttattttccctatatataaatgagata 636940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 302
Target Start/End: Original strand, 822507 - 822743
Alignment:
Q  65 agaagaaggtttgtcttttccaaattcaagaatcctgttaaaagttaacagaaaattttctnnnnnnnnttaaaattgaaggaaaatcaacagtgttaat 164  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||    
T  822507 agaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttctaaaaaaa-ttaaaattgaaggaaaattaacagtgttaat 822605  T
Q  165 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  822606 agtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgtcagtgtcatcttaatagacctcaca 822705  T
Q  265 agaggtgaatgttattttccctatatataaatgagata 302  Q
    |||| |||||||||||||||||||||||||||||||||    
T  822706 agagatgaatgttattttccctatatataaatgagata 822743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 2623231 - 2623312
Alignment:
Q  179 tttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    |||||| ||||||| |||||| ||||||| |||||||||||||||||| |||| |||||||||||||||| |||||| ||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 13231823 - 13231900
Alignment:
Q  171 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||||||  ||||||| | |||| ||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  13231823 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcat 13231900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 41456066 - 41456157
Alignment:
Q  196 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttcccta 287  Q
    |||||||||||| ||||||||||||| |||| |||||| |||||||||||||| || ||||||||||   ||||||| ||| ||| ||||||    
T  41456066 aacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaattatcccta 41456157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 35665 - 35558
Alignment:
Q  176 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 275  Q
    ||||||||  ||||||||||||||||||| || ||| ||||||||||||||||| |  || |||  ||||||| |||||||| ||||   ||| ||||||    
T  35665 gtgtttgtatatttgataaaaacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtcatattaatagatctcatgggagatgaatg 35566  T
Q  276 ttattttc 283  Q
    | ||||||    
T  35565 taattttc 35558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 279736 - 279802
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  279736 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 279802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 636116 - 636050
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  636116 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 636050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 821919 - 821853
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||||||| || | ||||| ||||||||| |||| |||| ||||||||||||| ||||||||    
T  821919 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagagggg 821853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 13231571 - 13231492
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    ||||||||||| |||| |||| | || |||| ||||||| |||||| ||||||||||| || || |||||| ||||||||    
T  13231571 aagggaggtgtgtgtctatttaaaaagaactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcat 13231492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 33231221 - 33231130
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    ||||||||| || ||| || |||| |||||| ||||||| ||  || | ||||||||| |||||||||||  |||||||| |||||||||||    
T  33231221 aagggaggttttagtctatatgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacct 33231130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 30204245 - 30204188
Alignment:
Q  173 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactaga 231  Q
    ||||||||| |  ||||||||||||||||||| || |||||||||||||| ||||||||    
T  30204245 gaggtgtttatttatttgataaaaacttaagg-aggttagtgtaagtttttaaactaga 30204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 25476032 - 25476174
Alignment:
Q  145 ggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtg 244  Q
    ||||||| ||| ||||||||||  |||||||||||||||  |||| |||||||||| |||||| || |||||||||||||||||||||||  ||||||||    
T  25476032 ggaaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtg 25476131  T
Q  245 tcatcttaatagacctcacaagaggtgaatgttattttcccta 287  Q
    |||| |||||| ||||||   ||||||||||| |||| |||||    
T  25476132 tcattttaataaacctcaggggaggtgaatgtaatttccccta 25476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 27702673 - 27702583
Alignment:
Q  170 agggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    ||||||||||||||| |||||||||||||| ||||||  ||||||||| |||||||| || || ||||||||||||||| |||||| ||||    
T  27702673 agggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaacct 27702583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 28651768 - 28651705
Alignment:
Q  199 ttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctca 262  Q
    ||||||||| ||| |||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctca 28651705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 44633420 - 44633342
Alignment:
Q  157 gtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||||  ||||||||| |||||| |||||| ||  ||||||||||| ||||||||||||||||||||| |||||    
T  44633420 gtgttaatagaaaagggaggtatttgtctatttgaaaattacttaagggaggttagtgtaagttttaaaactaaagggg 44633342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 48621251 - 48621150
Alignment:
Q  157 gtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatag 256  Q
    ||||||||| ||| |||| ||||||||| |||  || | |||||||||||||||| |||||  |||||||||||||||| ||||||||| || | |||||    
T  48621251 gtgttaataatgaggggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgtgatttcaatag 48621152  T
Q  257 ac 258  Q
    ||    
T  48621151 ac 48621150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 48621820 - 48621920
Alignment:
Q  148 aaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtca 247  Q
    |||| ||| |||||||||||||||||||||| ||||  |||  | ||||||||||||||| |||||||| ||||| |||||| ||||| |||  ||||||    
T  48621820 aaattaactgtgttaatagtgaagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtca 48621919  T
Q  248 t 248  Q
    |    
T  48621920 t 48621920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 28652427 - 28652505
Alignment:
Q  157 gtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||| || |||||||  |||| ||| |||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  28652427 gtgttaagagagaagggaattgttagtctattttataaaaatttaagggaggttagtgtaagttttaaaaatagagggg 28652505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 44634034 - 44634113
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||| ||||  ||||||| | |||||||||||| || || |  |||||||||||||||||| ||||| ||||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcat 44634113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 51795713 - 51795631
Alignment:
Q  153 aacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||||||   ||||||| || |||||| |||| |||| |||||| ||||| ||||| ||  |||||||||||||||||    
T  51795713 aacagtgttaatgaagaagggatgtctttgtctatttaataagaacttaggggaggttagtatatattttaaaactagagggg 51795631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 35063747 - 35063603
Alignment:
Q  145 ggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtg 244  Q
    ||||||| ||||||||||||||  ||||||| |||||||| |||| ||||||||||||||||| ||  ||||||||||||||||||||||  ||||||||    
T  35063747 ggaaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtg 35063648  T
Q  245 tcatcttaatagacctcacaagaggtgaatgttattttccctata 289  Q
     ||| |||||| ||||||   ||||||| ||| |||| |||||||    
T  35063647 acattttaataaacctcaagggaggtgagtgtaatttcccctata 35063603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 38356946 - 38356835
Alignment:
Q  176 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 275  Q
    ||||||||  ||||||| |||||||||||||| ||| |||| |||||||||||||||||| |||  ||||||| |||||||||||||   ||||||| ||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T
Q  276 ttattttcccta 287  Q
    | ||||||||||    
T  38356846 taattttcccta 38356835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 35064389 - 35064475
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 255  Q
    ||||||||| ||| || ||||||| | || ||||||||  ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  35064389 aagggaggtatttatctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaata 35064475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 19601587 - 19601539
Alignment:
Q  176 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaa 224  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  19601587 gtgtttgtatatttgataaaaacttaagggagattagtgtaagttttaa 19601539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 40056402 - 40056313
Alignment:
Q  196 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttccc 285  Q
    |||||||||||| ||| |||||||||| |||||||| ||| ||| |||||||| || ||| ||||||   ||||||| ||| ||||||||    
T  40056402 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgtaattttccc 40056313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 1300113 - 1299968
Alignment:
Q  136 aaaattgaaggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    |||||||| ||||| | ||| |||||||||  ||||||||||||||||| |||| || | ||| | || ||| |||| || |||||| |||||||| |||    
T  1300113 aaaattgatggaaagttaacggtgttaataaggaagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggg 1300014  T
Q  236 atgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttc 283  Q
     |||  ||||||| |||||| || ||| | ||||||| ||| ||||||    
T  1300013 gtgt--gtgtcattttaataaacttcaaaggaggtgagtgtaattttc 1299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 29453620 - 29453680
Alignment:
Q  173 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagg 233  Q
    |||||||||||| |||| | |||||||||| |||| ||| ||||||||| |||||||||||    
T  29453620 gaggtgtttgtctatttcaaaaaaacttaaaggaggttaatgtaagtttcaaaactagagg 29453680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 45004845 - 45004704
Alignment:
Q  145 ggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtg 244  Q
    ||||||| ||||||||||||||  ||||||| |||||||| |||| ||||||||||||||||| ||  |||||| |||||||||| ||||| ||||| ||    
T  45004845 ggaaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattg 45004746  T
Q  245 tcatcttaatagacctcacaagaggtgaatgttattttccct 286  Q
     ||| |||||| |||||| | ||||||| ||| |||||||||    
T  45004745 acattttaataaacctcagaggaggtgagtgtaattttccct 45004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 50766098 - 50766026
Alignment:
Q  175 ggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtca 247  Q
    |||||||||| | ||||| ||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||    
T  50766098 ggtgtttgtctaattgatgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtca 50766026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 45145969 - 45145903
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    |||||||||||||||  |||||||| ||||||||||||  ||||||| |||||||||||||||||||    
T  45145969 aagggaggtgtttgtttatttgatagaaacttaagggatgttagtgttagttttaaaactagagggg 45145903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 45005504 - 45005600
Alignment:
Q  179 tttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctcacaagaggtgaatg 275  Q
    |||||| ||||||| | |||||||||||||| ||||| |||||||||||||| ||  |||| |||||||| |||||| ||||||   ||||||||||    
T  45005504 tttgtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtgaatg 45005600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctc 261  Q
    |||||||||||||||| |||| || | ||| |||||||| ||||||| |||||||||| |||| |||||||  ||||||| |||||| |||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 51489821 - 51489913
Alignment:
Q  168 gaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| | |   ||||||||||||||||| ||| |||| ||| |||||| ||||    
T  51489821 gaagggaggtgtttgtctatttgttaaaaacataagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaacct 51489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 55350408 - 55350474
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    |||||||||||||||| ||||||||| ||  |||||||| |||||||  | |||||||||| |||||    
T  55350408 aagggaggtgtttgtccatttgataacaaagtaagggaggttagtgtttgatttaaaactaaagggg 55350474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 35744509 - 35744589
Alignment:
Q  175 ggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 255  Q
    |||||||||  ||||||| |||| | ||||||| ||| ||| |||||| ||| |||||||||||||| |||| | ||||||    
T  35744509 ggtgtttgtttatttgattaaaattcaagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaata 35744589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 50071965 - 50072077
Alignment:
Q  136 aaaattgaaggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    |||||| | ||||||| |||| ||||||||  |||||||| |||||||  ||||||| | |||||||||||| || |||||||||||||||||| |||||    
T  50071965 aaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggg 50072064  T
Q  236 atgtcagtgtcat 248  Q
     ||| ||||||||    
T  50072065 gtgttagtgtcat 50072077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 26305646 - 26305564
Alignment:
Q  173 gaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaata 255  Q
    |||||||||||| |||||||||||| ||| ||||||||| |||||||||||||| |||||| | |||| ||||||| ||||||    
T  26305646 gaggtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcattttaata 26305564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 12007570 - 12007491
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||||||||  ||||||| | |||||||| ||| ||| |||| |||||||||||||||||| ||||||||||||    
T  12007570 aagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcat 12007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 39631387 - 39631447
Alignment:
Q  194 aaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaat 254  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| | |||| |||||    
T  39631387 aaaacttaagggagattattgtaagttttaaaaatagaggggatgtcaatatcattttaat 39631447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 12007919 - 12007968
Alignment:
Q  199 ttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcat 12007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 2486923 - 2487015
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaa-gggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    |||||||||||||||   |||||| | | ||||| |||| |||||||| ||||||||||||||| ||| |||||||||| | |||||||||||    
T  2486923 aagggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagacct 2487015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 50071360 - 50071290
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgt 239  Q
    |||||| ||||||||  ||||||| ||| |||||||||| ||||||| | ||||||||||||| |||||||    
T  50071360 aagggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactagaagggatgt 50071290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 5473234 - 5473162
Alignment:
Q  156 agtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaacta 229  Q
    ||||||||||| ||||||| | ||||||  |||||| || || ||||||||| || ||||||||||||||||||    
T  5473234 agtgttaatagagaagggaagagtttgtgtatttgacaataatttaagggag-tttgtgtaagttttaaaacta 5473162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 54628522 - 54628465
Alignment:
Q  183 tcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtc 240  Q
    ||||||| || |||||||||||||| |||||||   ||||||||||||||||| ||||    
T  54628522 tcaatttaatgaaaacttaagggaggttagtgtcgattttaaaactagagggggtgtc 54628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 5474862 - 5474914
Alignment:
Q  196 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||||| || |||||||||||||||  ||||||| ||| ||||||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcat 5474914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 32641257 - 32641205
Alignment:
Q  196 aacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||||  ||||||||| |||||||| |||||| | ||||||||||||    
T  32641257 aacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcat 32641205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 30921571 - 30921660
Alignment:
Q  168 gaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaataga 257  Q
    ||||||||||||| ||| || |||| | |||||||||||| ||| |||| |||||||||||||||||||| | |||||||| ||||||||    
T  30921571 gaagggaggtgttagtctatatgattagaacttaagggagtttattgtatgttttaaaactagaggggattttagtgtcattttaataga 30921660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 19109586 - 19109660
Alignment:
Q  186 atttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||| || || ||||||||    
T  19109586 attttataaaaacttaagggaggttattgtaagttttaaaaatagaggggatgtcaatgttattttgatagacct 19109660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 13476008 - 13476066
Alignment:
Q  67 aagaaggtttgtcttttccaaattcaagaatcctgttaaaagttaacagaaaattttct 125  Q
    ||||||||||||| ||| | |||| |||||||| |||||||||||||||||||||||||    
T  13476008 aagaaggtttgtcgtttgccaattgaagaatcccgttaaaagttaacagaaaattttct 13476066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 14020086 - 14020033
Alignment:
Q  72 ggtttgtcttttccaaattcaagaatcctgttaaaagttaacagaaaattttct 125  Q
    |||||||||||| | |||| |||||||  |||||||||||||| ||||||||||    
T  14020086 ggtttgtcttttgccaattgaagaatctcgttaaaagttaacaaaaaattttct 14020033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 26670768 - 26670623
Alignment:
Q  136 aaaattgaaggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||  |||| | ||| |||||||||  ||||||||||||||||| |||| || | ||| | |||||| |||  || |||||| |||||||| |||    
T  26670768 aaaattgattgaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggg 26670669  T
Q  236 atgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttc 283  Q
     |||  ||||||| |||||| ||||||   ||||||| ||| ||||||    
T  26670668 gtgt--gtgtcattttaataaacctcaagggaggtgagtgtaattttc 26670623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 24153308 - 24153215
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacctca 262  Q
    |||||||||||||||| |||| || | |||||||||||| ||||||| | |||||||||||||| || |||| || |||| |||||||||||||    
T  24153308 aagggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctca 24153215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 17115849 - 17115753
Alignment:
Q  136 aaaattgaaggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagag 232  Q
    |||||| | ||||||| |||| ||||||||  |||||||| |||||||  ||||||| | |||||||||||| || |||||||||||||||||||||    
T  17115849 aaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagag 17115753  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 24153943 - 24154034
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcatcttaatagacct 260  Q
    |||||||||||||||  |||||||| ||||||||||||| ||| ||| ||||||||||||||||||| | | | |||||| |||||| ||||    
T  24153943 aagggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaacct 24154034  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 29108704 - 29108762
Alignment:
Q  171 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaacta 229  Q
    |||||||||||||  ||||| |||||||| ||||||| |||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaacta 29108762  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 17116461 - 17116528
Alignment:
Q  172 ggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgt 239  Q
    ||||||||||||  ||||||| ||| ||||| |||| ||||||| ||||||||||||||| |||||||    
T  17116461 ggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagaagggatgt 17116528  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 35145681 - 35145615
Alignment:
Q  169 aagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    |||||| ||||||||| |||| || | ||||  |||||| |||||||||||||||||||||||||||    
T  35145681 aagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagggg 35145615  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 29265223 - 29265265
Alignment:
Q  193 aaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  29265223 aaaaacttgtgggaggttagtgtaagttttaaaactagagggg 29265265  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 29264735 - 29264658
Alignment:
Q  171 gggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||||||||||||  |||||  ||||||| ||||||| ||| | ||||||||||||||| || |||||| ||| ||||    
T  29264735 gggaggtgtttgtatatttgtgaaaaactcaagggaggttactataagttttaaaactaaagtggatgttagtatcat 29264658  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 29108166 - 29108123
Alignment:
Q  204 ggagattagtgtaagttttaaaactagaggggatgtcagtgtcat 248  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||    
T  29108166 ggaggttagtgtaagttttaaaactagagggg-tgttagtgtcat 29108123  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 40816313 - 40816249
Alignment:
Q  177 tgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagaggggatgtca 241  Q
    |||||||| ||| ||| |||||||||||||| ||| |||   |||||||||||||||||| ||||    
T  40816313 tgtttgtctattagatgaaaacttaagggaggttaatgtttattttaaaactagaggggaagtca 40816249  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 21516726 - 21516661
Alignment:
Q  168 gaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagg 233  Q
    |||||||| | ||| || ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516726 gaagggagctctttctctatttgataagaacttaagggagattagtgtatattttaaaactagagg 21516661  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 4833162 - 4833238
Alignment:
Q  157 gtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagg 233  Q
    |||||||||  ||||| ||  ||||||  ||||||| ||||||||||| || |||||||||||||||||||||||||    
T  4833162 gtgttaatatggaaggaagtcgtttgtatatttgattaaaacttaaggaaggttagtgtaagttttaaaactagagg 4833238  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 21516262 - 21516215
Alignment:
Q  186 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 233  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516262 atttgataagaacttaagggagattagtgtatattttaaaactagagg 21516215  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 21516485 - 21516438
Alignment:
Q  186 atttgataaaaacttaagggagattagtgtaagttttaaaactagagg 233  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  21516485 atttgataagaacttaagggagattagtgtatattttaaaactagagg 21516438  T

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Target: scaffold0301 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 7926 - 7855
Alignment:
Q  157 gtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaact 228  Q
    ||||||||||  |||| ||||||||||  ||||||| | |||||||| |||||||||||| |||||||||||    
T  7926 gtgttaatagaaaaggaaggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaact 7855  T

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Target: scaffold0301; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 6473 - 6529
Alignment:
Q  176 gtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagag 232  Q
    ||||||| | ||||||||| ||||||||||   ||||||||||||||||||||||||    
T  6473 gtgtttgcctatttgataataacttaaggggtgttagtgtaagttttaaaactagag 6529  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 283
Target Start/End: Original strand, 26 - 171
Alignment:
Q  136 aaaattgaaggaaaatcaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattagtgtaagttttaaaactagagggg 235  Q
    ||||||||  |||| | ||| |||||||||  ||||||||||||||||| |||| || | ||| | |||||| |||  || |||||| |||||||| |||    
T  26 aaaattgattgaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggg 125  T
Q  236 atgtcagtgtcatcttaatagacctcacaagaggtgaatgttattttc 283  Q
     |||  ||||||| |||||| ||||||   ||||||| ||| ||||||    
T  126 gtgt--gtgtcattttaataaacctcaagggaggtgagtgtaattttc 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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