View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_1 (Length: 534)
Name: NF0824_low_1
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 151 - 526
Target Start/End: Original strand, 45336375 - 45336752
Alignment:
| Q |
151 |
taaacaagtacataagatacaagacaccaattttattt---tatttttggaatatagtctttgattctaacactgaaagaccttctaaatttgatagtca |
247 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45336375 |
taaacaagtacataagatacaagacaccaattttttttatttttttttggaatatagtctttgattctaacactgaaagaccttctaaatttgatagtca |
45336474 |
T |
|
| Q |
248 |
ttaatagttgatgcttggagtctgatttgcttattgaatttctgaataaactcttccaacctcttattgcgatcctcattcgacatcttagaaaactcat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45336475 |
ttaatagttgatgcttggagtctgatttgcttattgaatttctgaataaactcttccacactcttattgcgatcctcattcgacatcttagaaaactcat |
45336574 |
T |
|
| Q |
348 |
ttgcttctacttttggttctatcttcatgtaatctaaccttctcactgaattcttcctttcatcaatcacaacatacttggctctattgtaggaaattaa |
447 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45336575 |
tttcttctacttttagttctatcttcatgtaatctaaccttctcactgaattcttcctttcatcaataacaacatacttggctctattgtaggaaattaa |
45336674 |
T |
|
| Q |
448 |
tgcagctttctctaacccatgttccttatgaccatcatcaccatctatttgcaaattcaagtgttgacttcatctcatt |
526 |
Q |
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| T |
45336675 |
tgcagctttctctaatccatgttccttatgaccatcatcaccatctatttgc-aattcaagtgttgacttcttctcatt |
45336752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 190 - 437
Target Start/End: Original strand, 6184704 - 6184963
Alignment:
| Q |
190 |
atttttggaatatagtctttgattctaacactgaaa-gaccttctaaatttgatagtcattaat--------agttgatgcttggagtctgatttgctta |
280 |
Q |
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||||||||||||||||||||||||||||| |||||| |||| |||||||||||| | |||| || |||||||||||| ||||| ||||||||| |
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| T |
6184704 |
atttttggaatatagtctttgattctaactctgaaaagaccgtctaaatttgatggacattgattaatttatagttgatgcttgaagtctaatttgctta |
6184803 |
T |
|
| Q |
281 |
ttgaatttctgaataaactcttccaacctcttattgcgatcctcattcgacatcttagaaaactcatt---tgcttctacttttggttctatcttcatgt |
377 |
Q |
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||||||||||||||||| ||||||| |||||||||| |||| ||||| |||||||||||||||||||| | |||||| ||||||||| |||||||| |
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| T |
6184804 |
ttgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttcttcttctatttttggttccatcttcatag |
6184903 |
T |
|
| Q |
378 |
aatctaaccttctcactgaattcttcctttcatcaatcacaacatacttggctctattgt |
437 |
Q |
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| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
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| T |
6184904 |
actctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgt |
6184963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 6185011 - 6185060
Alignment:
| Q |
452 |
gctttctctaacccatgttccttatgaccatcatcaccatctatttgcaa |
501 |
Q |
| |
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||||||||||| |||||||||| ||| ||||||||||||||| |||||| |
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| T |
6185011 |
gctttctctaattcatgttccttgtgaacatcatcaccatctacttgcaa |
6185060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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