View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_13 (Length: 321)
Name: NF0824_low_13
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 100 - 307
Target Start/End: Complemental strand, 2874184 - 2873977
Alignment:
| Q |
100 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggcca |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2874184 |
tgcatatgatgttaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtattcttgtacatttattgagcatgcagaaattcgggcca |
2874085 |
T |
|
| Q |
200 |
aagatggtacatatgatgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatag |
299 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
2874084 |
aagatggtacatatgctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttagacttgtcagtttatag |
2873985 |
T |
|
| Q |
300 |
tatattct |
307 |
Q |
| |
|
||| |||| |
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| T |
2873984 |
tattttct |
2873977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 2797916 - 2798117
Alignment:
| Q |
106 |
tgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatg |
205 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797916 |
tgatgtgaagttgaagtcaaaaaatggatggtttatttagattgtctccttatttattcttgtacatttattgagcatgcagaaattcgggccaaagatg |
2798015 |
T |
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| Q |
206 |
gtacatatgatgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatatt |
305 |
Q |
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| T |
2798016 |
gtacatatgctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatttt |
2798115 |
T |
|
| Q |
306 |
ct |
307 |
Q |
| |
|
|| |
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|
| T |
2798116 |
ct |
2798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 2847368 - 2847230
Alignment:
| Q |
100 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggcca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2847368 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggcca |
2847269 |
T |
|
| Q |
200 |
aagatggtacatatgatgtgaattgtgtgttgatgtttc |
238 |
Q |
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| T |
2847268 |
aagatggtacatatgctgtgaattgtgtgttgatgtttc |
2847230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 3160828 - 3160966
Alignment:
| Q |
100 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggcca |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3160828 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggcca |
3160927 |
T |
|
| Q |
200 |
aagatggtacatatgatgtgaattgtgtgttgatgtttc |
238 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
3160928 |
aagatggtacatatgctgtgaattgtgtgttgatgtttc |
3160966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 3146180 - 3146349
Alignment:
| Q |
138 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
237 |
Q |
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||||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3146180 |
ttatttaaattgtctccgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
3146279 |
T |
|
| Q |
238 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3146280 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
3146349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 2888406 - 2888237
Alignment:
| Q |
138 |
ttatttagattgtctccgtatgtaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
237 |
Q |
| |
|
||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888406 |
ttatttaaattgtcttcgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
2888307 |
T |
|
| Q |
238 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2888306 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 2888904 - 2888860
Alignment:
| Q |
100 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2888904 |
tgcatatgatgtcaagttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 3160953 - 3161003
Alignment:
| Q |
257 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
3160953 |
tgtgttgatgtttctagagtaacttagacttgtgagtttatagtattttct |
3161003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 2847243 - 2847193
Alignment:
| Q |
257 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
2847243 |
tgtgttgatgtttctagagtaacttagacatgtgagtttatagtattttct |
2847193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 3145957 - 3146002
Alignment:
| Q |
100 |
tgcatatgatgtcaagttgaagtc-aaaaaatggatggtttattta |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3145957 |
tgcatatgatgtcaagttgaagtcaaaaaaatggatggtttattta |
3146002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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