View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_15 (Length: 298)
Name: NF0824_low_15
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 38406431 - 38406202
Alignment:
| Q |
41 |
aaatcttaccattggattaaataagatttattaattaaattaaattaaatagtgaaaaacaaccttttccgtccttacggcaaaaccaacttacttacgc |
140 |
Q |
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| T |
38406431 |
aaatcttatcattggattaaataagatttattaattaaattaaat-----agtgaaaaacaaccttttccgtccttacggcaaaaccaacttacttacgc |
38406337 |
T |
|
| Q |
141 |
actggacaaaactaaaatacatgaaactaacataagtaattgtttgactcccataagtgggacccatattattgacttnnnnnnnctaaatatcattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38406336 |
actggacaaaactaaaatacatgaaactaacataagtaattgtttgactcccataagtgggacccatattattgacttaaaaaaactaaatatcattcat |
38406237 |
T |
|
| Q |
241 |
cgatggagctggggtctttgtgaacaaagttatta |
275 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38406236 |
cgatggagctggggtctttgtgaacaaagttatta |
38406202 |
T |
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