View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_16 (Length: 294)
Name: NF0824_low_16
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 33 - 266
Target Start/End: Complemental strand, 3908688 - 3908455
Alignment:
| Q |
33 |
gagatgaattacttgatggtgttgaggatgatggagttttggctttctttcccttacgacaaccaccaccaataggaacatttctcaatgttccaccttg |
132 |
Q |
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| T |
3908688 |
gagaagaattacttgatggtgttgaggatgatggagttttggatttctttcccttacgacaaccaccaccaataggaacatttctcaatgttccaccttg |
3908589 |
T |
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| Q |
133 |
agtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcagaacttggtgttgaatgaatcacaccttgga |
232 |
Q |
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| T |
3908588 |
agtccagtaccttctgcatgttttgcagaagaaacgaggctgagataggctatagttgttgtaatagcagaacttggtgttgaatgaatcacacctagga |
3908489 |
T |
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| Q |
233 |
cacttctgaggttgaggatgagcttgaacaagct |
266 |
Q |
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| T |
3908488 |
cacttctgaggttgaggatgagcttgaacaagct |
3908455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 39741183 - 39741064
Alignment:
| Q |
95 |
ccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgt |
194 |
Q |
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| T |
39741183 |
ccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaagactgtagttgttgt |
39741084 |
T |
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| Q |
195 |
aatagcagaacttggtgttg |
214 |
Q |
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| T |
39741083 |
aataacagaatttggtgttg |
39741064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 34646118 - 34646049
Alignment:
| Q |
93 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaa |
162 |
Q |
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| T |
34646118 |
aaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaa |
34646049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 13481069 - 13481012
Alignment:
| Q |
181 |
gctatagttgttgtaatagcagaacttggtgttgaatgaatcacaccttggacacttc |
238 |
Q |
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| T |
13481069 |
gctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggacacttc |
13481012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 34976165 - 34976278
Alignment:
| Q |
121 |
tgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcagaacttggtgttgaatgaa |
220 |
Q |
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|||||| |||| ||||| |||||||| || || ||||||||| | | |||||||| || || || |||||||| |||||||| ||||||| |||| |
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| T |
34976165 |
tgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagagagactgtaattgttgtagtagcagaatttggtgtgagttgaa |
34976264 |
T |
|
| Q |
221 |
tcacaccttggaca |
234 |
Q |
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| T |
34976265 |
tcacaccttggaca |
34976278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 41895928 - 41895787
Alignment:
| Q |
93 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgtt |
192 |
Q |
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|||||||||| | |||||||||||| || | ||||||| |||||| |||||||| || |||||||| ||| | | || || || ||||||||||| || |
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| T |
41895928 |
aaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgagaggctatagttatt |
41895829 |
T |
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| Q |
193 |
gtaatagcagaacttggtgttgaatgaatcacaccttggaca |
234 |
Q |
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||| || ||||| || ||||| ||||| ||||||||||| |
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| T |
41895828 |
gtagtaacagaattttgtgttagttgaattgcaccttggaca |
41895787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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