View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0824_low_17 (Length: 290)

Name: NF0824_low_17
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0824_low_17
NF0824_low_17
[»] chr3 (8 HSPs)
chr3 (46-290)||(43566960-43567199)
chr3 (46-79)||(25012743-25012776)
chr3 (46-79)||(533719-533752)
chr3 (46-79)||(17438917-17438950)
chr3 (46-79)||(19559165-19559198)
chr3 (46-79)||(21595295-21595328)
chr3 (46-79)||(21789907-21789940)
chr3 (53-82)||(33712912-33712941)
[»] chr7 (6 HSPs)
chr7 (45-79)||(16683409-16683443)
chr7 (45-79)||(17657645-17657679)
chr7 (46-79)||(19396909-19396942)
chr7 (46-79)||(21766368-21766401)
chr7 (46-79)||(45001103-45001136)
chr7 (47-79)||(46671259-46671291)
[»] chr8 (8 HSPs)
chr8 (46-79)||(8512240-8512273)
chr8 (46-79)||(8514296-8514329)
chr8 (46-79)||(8515987-8516020)
chr8 (46-79)||(8518066-8518099)
chr8 (46-79)||(8519770-8519803)
chr8 (46-79)||(12838441-12838474)
chr8 (46-79)||(39534418-39534451)
chr8 (46-78)||(14438663-14438695)
[»] chr6 (3 HSPs)
chr6 (46-79)||(34352561-34352594)
chr6 (47-75)||(13240881-13240909)
chr6 (47-79)||(31204235-31204267)
[»] chr5 (4 HSPs)
chr5 (46-79)||(5769579-5769612)
chr5 (46-79)||(17013942-17013975)
chr5 (47-79)||(1138415-1138447)
chr5 (47-79)||(33168639-33168671)
[»] chr4 (3 HSPs)
chr4 (46-79)||(6385277-6385310)
chr4 (46-79)||(28494492-28494525)
chr4 (47-83)||(29630071-29630107)
[»] chr2 (5 HSPs)
chr2 (46-79)||(9415225-9415258)
chr2 (46-79)||(19063742-19063775)
chr2 (46-79)||(33134187-33134220)
chr2 (46-79)||(36802120-36802153)
chr2 (46-79)||(38702395-38702428)
[»] chr1 (5 HSPs)
chr1 (46-79)||(15597213-15597246)
chr1 (46-79)||(31530104-31530137)
chr1 (46-79)||(35547341-35547374)
chr1 (46-79)||(44922088-44922121)
chr1 (47-79)||(9978331-9978363)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 43566960 - 43567199
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaatctacccatgcactagcctcctacacttctcctaaactccttactttacttcgtaaatgatagcaag 145  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||     ||||||||||||||||||    
T  43566960 tgtgttcgttacacttttattttaatatttaaatctactcatggactagcctcctacacttctcctaaactccttac-----ttcgtaaatgatagcaag 43567054  T
Q  146 gaattggatggaattattttcgaacatggccacaatccagttcgccaaccaaatcaactaagtcccattaacctaaggttcgttgcatctgcaagatcat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  43567055 gaattggatggaattattttcgaacatggccacaatccagttcgccaaccaaatcaaccaagtcccattaacccaaggttcgctgcatctgcaagatcat 43567154  T
Q  246 aagacgtgtgcgcctcgacgcacgagagcgtgtcacattccctat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43567155 aagacgtgtgcgcctcgacgcacgagagcgtgtcacattccctat 43567199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 25012743 - 25012776
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    ||||||||||||||||||||||||||||||||||    
T  25012743 tgtgttcgttacacttttattttaatatttaaat 25012776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 533719 - 533752
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  533719 tgtgtttgttacacttttattttaatatttaaat 533752  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 17438917 - 17438950
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  17438917 tgtgtttgttacacttttattttaatatttaaat 17438950  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 19559198 - 19559165
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  19559198 tgtgtttgttacacttttattttaatatttaaat 19559165  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 21595295 - 21595328
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  21595295 tgtgtttgttacacttttattttaatatttaaat 21595328  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 21789907 - 21789940
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  21789907 tgtgtttgttacacttttattttaatatttaaat 21789940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 82
Target Start/End: Complemental strand, 33712941 - 33712912
Alignment:
Q  53 gttacacttttattttaatatttaaatcta 82  Q
    ||||||||||||||||||||||||||||||    
T  33712941 gttacacttttattttaatatttaaatcta 33712912  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 16683409 - 16683443
Alignment:
Q  45 ctgtgttcgttacacttttattttaatatttaaat 79  Q
    ||||||| |||||||||||||||||||||||||||    
T  16683409 ctgtgtttgttacacttttattttaatatttaaat 16683443  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 17657645 - 17657679
Alignment:
Q  45 ctgtgttcgttacacttttattttaatatttaaat 79  Q
    ||||||| |||||||||||||||||||||||||||    
T  17657645 ctgtgtttgttacacttttattttaatatttaaat 17657679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 19396942 - 19396909
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  19396942 tgtgtttgttacacttttattttaatatttaaat 19396909  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 21766368 - 21766401
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  21766368 tgtgtttgttacacttttattttaatatttaaat 21766401  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 45001103 - 45001136
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  45001103 tgtgtttgttacacttttattttaatatttaaat 45001136  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 46671259 - 46671291
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaat 79  Q
    ||||| |||||||||||||||||||||||||||    
T  46671259 gtgtttgttacacttttattttaatatttaaat 46671291  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 8512240 - 8512273
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  8512240 tgtgtttgttacacttttattttaatatttaaat 8512273  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 8514296 - 8514329
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  8514296 tgtgtttgttacacttttattttaatatttaaat 8514329  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 8515987 - 8516020
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  8515987 tgtgtttgttacacttttattttaatatttaaat 8516020  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 8518066 - 8518099
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  8518066 tgtgtttgttacacttttattttaatatttaaat 8518099  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 8519770 - 8519803
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  8519770 tgtgtttgttacacttttattttaatatttaaat 8519803  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 12838474 - 12838441
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  12838474 tgtgtttgttacacttttattttaatatttaaat 12838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 39534418 - 39534451
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  39534418 tgtgtttgttacacttttattttaatatttaaat 39534451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 14438663 - 14438695
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaa 78  Q
    |||||| ||||||||||||||||||||||||||    
T  14438663 tgtgtttgttacacttttattttaatatttaaa 14438695  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 34352561 - 34352594
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  34352561 tgtgtttgttacacttttattttaatatttaaat 34352594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 13240881 - 13240909
Alignment:
Q  47 gtgttcgttacacttttattttaatattt 75  Q
    |||||||||||||||||||||||||||||    
T  13240881 gtgttcgttacacttttattttaatattt 13240909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 31204235 - 31204267
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaat 79  Q
    ||||| |||||||||||||||||||||||||||    
T  31204235 gtgtttgttacacttttattttaatatttaaat 31204267  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 5769612 - 5769579
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  5769612 tgtgtttgttacacttttattttaatatttaaat 5769579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 17013975 - 17013942
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  17013975 tgtgtttgttacacttttattttaatatttaaat 17013942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 1138415 - 1138447
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaat 79  Q
    ||||| |||||||||||||||||||||||||||    
T  1138415 gtgtttgttacacttttattttaatatttaaat 1138447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 33168639 - 33168671
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaat 79  Q
    ||||| |||||||||||||||||||||||||||    
T  33168639 gtgtttgttacacttttattttaatatttaaat 33168671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 6385310 - 6385277
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  6385310 tgtgtttgttacacttttattttaatatttaaat 6385277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 28494525 - 28494492
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  28494525 tgtgtttgttacacttttattttaatatttaaat 28494492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 29630071 - 29630107
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaatctac 83  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  29630071 gtgtttgttacacttttattttaatatttgaatctac 29630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 9415225 - 9415258
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  9415225 tgtgtttgttacacttttattttaatatttaaat 9415258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 19063775 - 19063742
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  19063775 tgtgtttgttacacttttattttaatatttaaat 19063742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 33134187 - 33134220
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  33134187 tgtgtttgttacacttttattttaatatttaaat 33134220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 36802153 - 36802120
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  36802153 tgtgtttgttacacttttattttaatatttaaat 36802120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 38702395 - 38702428
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  38702395 tgtgtttgttacacttttattttaatatttaaat 38702428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 15597246 - 15597213
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  15597246 tgtgtttgttacacttttattttaatatttaaat 15597213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 31530104 - 31530137
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  31530104 tgtgtttgttacacttttattttaatatttaaat 31530137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 35547341 - 35547374
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  35547341 tgtgtttgttacacttttattttaatatttaaat 35547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 44922088 - 44922121
Alignment:
Q  46 tgtgttcgttacacttttattttaatatttaaat 79  Q
    |||||| |||||||||||||||||||||||||||    
T  44922088 tgtgtttgttacacttttattttaatatttaaat 44922121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 9978363 - 9978331
Alignment:
Q  47 gtgttcgttacacttttattttaatatttaaat 79  Q
    ||||| |||||||||||||||||||||||||||    
T  9978363 gtgtttgttacacttttattttaatatttaaat 9978331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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