View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_24 (Length: 251)
Name: NF0824_low_24
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 26564486 - 26564729
Alignment:
| Q |
1 |
agagaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcagtgaacgaa |
100 |
Q |
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| T |
26564486 |
agagaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcagtgaacgaa |
26564585 |
T |
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| Q |
101 |
gcggtgcacatttggttgctgtcagtgcttattatcatgacatgtatggtcactcattgaagaaggtaatgtgattactttcatctttttatttcaattg |
200 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564586 |
gcggcgcacatttggttgccgtcagtgcttattatcatgacatgtacggtcactcattgaagaaggtaatgtgattactttcatctttttatttcaattg |
26564685 |
T |
|
| Q |
201 |
catttatctattttggtattcaatttcaagctgacttcatatca |
244 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26564686 |
catttatctattttggtattcaatttcaagctaacttcatatca |
26564729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 26552638 - 26552881
Alignment:
| Q |
1 |
agagaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcagtgaacgaa |
100 |
Q |
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| T |
26552638 |
agagaaattgcacagaaggatgcaaaggttctgtacaaagcgggggaaaagaaactgggaaccgatgaaaagacatttgtccaaatattcagtgaaagga |
26552737 |
T |
|
| Q |
101 |
gcggtgcacatttggttgctgtcagtgcttattatcatgacatgtatggtcactcattgaagaaggtaatgtgattactttcatctttttatttcaattg |
200 |
Q |
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| T |
26552738 |
gcagcgcgcatttggctgccgtcagttcatattatcatgacatgtatggtcactcattgaaaaaggtaacttgatcactttaatcctatcaattcaactt |
26552837 |
T |
|
| Q |
201 |
catttatctattttggtattcaatttcaagctgacttcatatca |
244 |
Q |
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| T |
26552838 |
catttatctattgagatattcaatttcaagttaaattcatatca |
26552881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 26558726 - 26558892
Alignment:
| Q |
3 |
agaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcagtgaacgaagc |
102 |
Q |
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|||||||||||||||||||||||| |||||||||| | || ||||||||||||||| | ||||||||||||||| ||||||||||||||||||| || |
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| T |
26558726 |
agaaatcgctgagaaggatgcaaaagttctctacaaaaccttagaaaagaaactcggatccgatgaaaagacttttgtccaaatattcagtgaacggagt |
26558825 |
T |
|
| Q |
103 |
ggtgcacatttggttgctgtcagtgcttattatcatgacatgtatggtcactcattgaagaaggtaa |
169 |
Q |
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| T |
26558826 |
ggcacgcatttggctgccgtcaattcttattatcatgacatgtatggtcactcactgaagaaggtaa |
26558892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 50935256 - 50935013
Alignment:
| Q |
1 |
agagaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcagtgaacgaa |
100 |
Q |
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|||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
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| T |
50935256 |
agagaaattgctgagaaggatgcaaaagttctctacaaagcgggtgaaaagaaactcggaactgatgaaaagacttttgtccaaatattcagtgaaagga |
50935157 |
T |
|
| Q |
101 |
gcggtgcacatttggttgctgtcagtgcttattatcatgacatgtatggtcactcattgaagaaggtaatgtgattactttcatctttttatttcaattg |
200 |
Q |
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| | |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || || ||||| || ||||| | |
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| T |
50935156 |
gtgccgcacatttggctgcaatcagttcttattatcatgacatgtatggtcactcattgaagaaggtattttgatcacattaatcttatttattcaactt |
50935057 |
T |
|
| Q |
201 |
catttatctattttggtattcaatttcaagctgacttcatatca |
244 |
Q |
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|||||||||||| ||||| | ||||||||||| |||||||| |
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| T |
50935056 |
catttatctattgaagtattgattttcaagctgaaatcatatca |
50935013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45507622 - 45507531
Alignment:
| Q |
1 |
agagaaatcgctgagaaggatgcaaaggttctctacagagccggggaaaagaaactcggaactgatgaaaagacttttatccaaatattcag |
92 |
Q |
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|||||||| |||||||| ||||| |||||||| || | ||| || || |||||||| ||||||||||| || |||||| | ||||||||||| |
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| T |
45507622 |
agagaaatggctgagaacgatgccaaggttctttataaagcaggtgagaagaaactgggaactgatgagaaaacttttgtgcaaatattcag |
45507531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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