View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_27 (Length: 244)
Name: NF0824_low_27
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 32837568 - 32837335
Alignment:
| Q |
11 |
aaattccccataggatcaaaggaatatgcacaaataagataagggtgtgggggtaggaacaagggcaatagggatacttcttagttctgtgttctactag |
110 |
Q |
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| T |
32837568 |
aaattccccataggatcaaaggaatatgcacaaataagataagggtgtgggggtaggaacaagggcaatagggatacttcttagttctgtgttctacgag |
32837469 |
T |
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| Q |
111 |
ataaagggaaggcaattactgtactagatattgagcagtcatttcatcgnnnnnnnnnnnnnnnnnnnngaaacacattaacaaaactctctaaatgtct |
210 |
Q |
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| T |
32837468 |
ataaagggaagacaattattgtactagatattgagcagtcatttcatcgtttttcttttatttttctttgaaacacattaacaaaactctctaaatgtct |
32837369 |
T |
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| Q |
211 |
tggtttcaatacaaaaggagaaagaattctccat |
244 |
Q |
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| T |
32837368 |
tggtttcaatacaaaaggagaaagaattctccat |
32837335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 19915938 - 19916082
Alignment:
| Q |
14 |
ttccccataggatcaaaggaatatgcacaaataagataagggtgtgggggtaggaacaagggcaatagggatacttcttagttctgt-gttctactagat |
112 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| | |||||||| ||||| | |||| |||| || |
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| T |
19915938 |
ttccccgtaggatcaaaggaatatgaacaaataagataagggtctgggggtaggaacaagagcaatagagctacttcttggttctttagttccactatat |
19916037 |
T |
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| Q |
113 |
aaagggaaggcaattactgtactagatattgagcagtcatttcat |
157 |
Q |
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| T |
19916038 |
aaagggaaggtgattattctgctaaatattgagaagtcgtttcat |
19916082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 19916105 - 19916170
Alignment:
| Q |
180 |
gaaacacattaacaaaactctctaaatgtc--ttggtttcaatacaaaaggagaaagaattctcca |
243 |
Q |
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| T |
19916105 |
gaaacacattatcaaaactctccctctgtcacttggtttcaatacaaaaggagaaagaattctcca |
19916170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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