View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_29 (Length: 221)
Name: NF0824_low_29
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2035807 - 2035952
Alignment:
| Q |
1 |
cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2035807 |
cttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata |
2035906 |
T |
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| Q |
101 |
agatttatactgctgcgacaagccaggtacattcattacgagtatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2035907 |
agatttatactgctgcgacaagccaggtacattcattacgagtatt |
2035952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 1990057 - 1990202
Alignment:
| Q |
1 |
cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
1990057 |
cttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctcaaaggtttgaagata |
1990156 |
T |
|
| Q |
101 |
agatttatactgctgcgacaagccaggtacattcattacgagtatt |
146 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
1990157 |
agatctatactgatgcggcaagccaggtacattcattacgagtatt |
1990202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 2021628 - 2021764
Alignment:
| Q |
10 |
tgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttata |
109 |
Q |
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| T |
2021628 |
tgtagaatggacacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctcaaaggtttgaagataagatttaca |
2021727 |
T |
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| Q |
110 |
ctgctgcgacaagccaggtacattcattacgagtatt |
146 |
Q |
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| T |
2021728 |
cttctgcgacaagcaaggtacattcattacgagtatt |
2021764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2018987 - 2019132
Alignment:
| Q |
1 |
cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata |
100 |
Q |
| |
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|||||| | |||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||| | |||| ||||| |||||||||||| |
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| T |
2018987 |
cttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagata |
2019086 |
T |
|
| Q |
101 |
agatttatactgctgcgacaagccaggtacattcattacgagtatt |
146 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
2019087 |
agatttatacttccgcgacaagccaggtacattcattaccagtatt |
2019132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
| Q |
16 |
atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg |
115 |
Q |
| |
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|||||||| |||| || |||||||||||||||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
40911156 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg |
40911255 |
T |
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| Q |
116 |
cgacaagccaggta |
129 |
Q |
| |
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| |||||||||||| |
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| T |
40911256 |
caacaagccaggta |
40911269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
| Q |
16 |
atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg |
115 |
Q |
| |
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|||||||| |||| || |||||||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
44968831 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg |
44968732 |
T |
|
| Q |
116 |
cgacaagccaggta |
129 |
Q |
| |
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| |||||||||||| |
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| T |
44968731 |
caacaagccaggta |
44968718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
| Q |
16 |
atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg |
115 |
Q |
| |
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|||||||| |||| || |||||||||||||||||| || ||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
44983146 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg |
44983047 |
T |
|
| Q |
116 |
cgacaagccaggta |
129 |
Q |
| |
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| |||||||||||| |
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|
| T |
44983046 |
caacaagccaggta |
44983033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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