View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0824_low_6 (Length: 425)
Name: NF0824_low_6
Description: NF0824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0824_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 413
Target Start/End: Original strand, 19091951 - 19092338
Alignment:
| Q |
29 |
actaactttgtaaccaagcaaaaatttcaagttccatgcaagtggttctcgtaaaccattcaaatttcctatgaatgaagcaacggaattacaagaaaac |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19091951 |
actaactttgtaaccaagcaaaaattacaagttccatgcaagtggttctcgtaaaccattcaaatttcctatgaatgaagcaacggaattacaagaaaac |
19092050 |
T |
|
| Q |
129 |
catgagccctaagccacttaaatttgtggaattatgtctatatcaactggttctaggttgttgctttgacatgaataaataataatgtgcttctatttcg |
228 |
Q |
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|||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19092051 |
catgagccctaaaccacttaaatttgtggaattgtgtcaatatcaactggttctaggttgttgctttgacatgaataaataataatgtgcttctatttcg |
19092150 |
T |
|
| Q |
229 |
agtctacgattgttattttcaactttctagttggaggaagagcgaaatcgatannnnnnnnnnnnnnnnnatcaaaacgtcattgttgcataagccataa |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
19092151 |
agtctacgattgttattttcaactttctagttggaggaagagcgacatcgat--------ttatttttttatcaaaacgtcattgttgcataagccataa |
19092242 |
T |
|
| Q |
329 |
taatcattatgttgtg-----------tgttctaaataaataatgttgttcttggcaaacttttttgacagttaaaatatgctgtatatattcttc |
413 |
Q |
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|||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
19092243 |
taatcattatgttgtgttctatttaactttttaaaataaattatgttgttcttggcaaacttttttgacagttaaattatgttgtatatattcttc |
19092338 |
T |
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