View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825-Insertion-10 (Length: 324)

Name: NF0825-Insertion-10
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825-Insertion-10
NF0825-Insertion-10
[»] chr3 (6 HSPs)
chr3 (8-302)||(45268809-45269100)
chr3 (239-281)||(5641613-5641655)
chr3 (239-273)||(48546202-48546236)
chr3 (239-273)||(53163623-53163657)
chr3 (239-271)||(8125668-8125700)
chr3 (239-275)||(29373454-29373490)
[»] scaffold1787 (1 HSPs)
scaffold1787 (239-282)||(429-472)
[»] chr7 (7 HSPs)
chr7 (239-282)||(14204301-14204344)
chr7 (239-302)||(21388552-21388615)
chr7 (239-302)||(47255060-47255123)
chr7 (239-273)||(21066915-21066949)
chr7 (239-276)||(27424868-27424905)
chr7 (239-271)||(15074911-15074943)
chr7 (245-281)||(25711158-25711194)
[»] chr5 (3 HSPs)
chr5 (239-302)||(39919071-39919134)
chr5 (239-273)||(12891586-12891620)
chr5 (239-273)||(26912862-26912896)
[»] chr4 (4 HSPs)
chr4 (239-282)||(15208551-15208594)
chr4 (239-285)||(19963811-19963857)
chr4 (239-273)||(33530822-33530856)
chr4 (239-272)||(42395256-42395289)
[»] chr2 (6 HSPs)
chr2 (239-302)||(38179223-38179286)
chr2 (239-281)||(1844846-1844888)
chr2 (242-292)||(20528163-20528213)
chr2 (239-273)||(44948625-44948659)
chr2 (241-273)||(32084873-32084905)
chr2 (245-281)||(32288408-32288444)
[»] chr1 (5 HSPs)
chr1 (239-282)||(14349673-14349716)
chr1 (239-273)||(33033155-33033189)
chr1 (239-273)||(42054362-42054396)
chr1 (241-282)||(35195637-35195678)
chr1 (245-273)||(24168614-24168642)
[»] chr8 (3 HSPs)
chr8 (239-285)||(13773387-13773433)
chr8 (239-276)||(43656065-43656102)
chr8 (238-282)||(14876600-14876644)
[»] chr6 (1 HSPs)
chr6 (239-272)||(14709028-14709061)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 45269100 - 45268809
Alignment:
Q  8 gaatactaaactatggcttttcacattccatgttagggaaactgagtgaggagtgtgacgtactcttttttattttgtggtggcatttgaaatttgagat 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  45269100 gaatactaaactatggcttttcacattccatattagggaaactgagtgaggagtgtgac--actcttttttattttgtggtggcatttgaaatttgagat 45269003  T
Q  108 tgattcgtaaactcttgagtagcctgtactagcctagctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgacagtc 207  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45269002 tgattcgtaaactcttgtgtagcctgtactaccctagctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgaaagtc 45268903  T
Q  208 acattaaaagtgattaaatgatttctaatgaattgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 302  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||||||||| | |||| |||||||||||| ||||||    
T  45268902 acattaaaagtgattaaatgatttccaatgaattgcatattatatgcagagacc-gggttcgaacctcatgcactccatatttaaattatgtgag 45268809  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 5641655 - 5641613
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacac 281  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  5641655 attgcatattatatgcaggggccggggttcgaacctcggacac 5641613  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 48546202 - 48546236
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    ||||||||||||||||||||| |||||||||||||    
T  48546202 attgcatattatatgtagggatcggggttcgaacc 48546236  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 53163623 - 53163657
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  53163623 attgcatattatatgtaggggccggggttcgaacc 53163657  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 8125668 - 8125700
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaa 271  Q
    ||||||||||||||| |||||||||||||||||    
T  8125668 attgcatattatatgcagggaccggggttcgaa 8125700  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 29373490 - 29373454
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctc 275  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  29373490 attgcatattatatgcaggggccggggttcgaacctc 29373454  T

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Target: scaffold1787 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 429 - 472
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||    
T  429 attgcatattatatgcaggggccggggttcgaacctcggacact 472  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 14204301 - 14204344
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    |||||||||||||||||||| | ||||||||||||||| |||||    
T  14204301 attgcatattatatgtaggggctggggttcgaacctcggacact 14204344  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 21388552 - 21388615
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 302  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  21388552 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 21388615  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 47255123 - 47255060
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 302  Q
    |||||||||||| || |||  |||||||||||||| || |||||||| | ||||||||||||||    
T  47255123 attgcatattatctgcaggagccggggttcgaaccccggacacttcacaattaaattgtgtgag 47255060  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 21066915 - 21066949
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  21066915 attgcatattatatgtaggggccggggttcgaacc 21066949  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 27424868 - 27424905
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcg 276  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  27424868 attgcatattatatgcaggggccggggttcgaacctcg 27424905  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 15074943 - 15074911
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaa 271  Q
    ||||||||||||||| |||||||||||||||||    
T  15074943 attgcatattatatgcagggaccggggttcgaa 15074911  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 25711194 - 25711158
Alignment:
Q  245 tattatatgtagggaccggggttcgaacctcgtacac 281  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  25711194 tattatatgtaggggccggggttcgaacctcggacac 25711158  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 39919134 - 39919071
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 302  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  39919134 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 39919071  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 12891586 - 12891620
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  12891586 attgcatattatatgtaggggccggggttcgaacc 12891620  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 26912862 - 26912896
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  26912862 attgcatattatatgtaggggccggggttcgaacc 26912896  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 15208551 - 15208594
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    |||||||||||||| |||| |||||||||||||||||| |||||    
T  15208551 attgcatattatatataggaaccggggttcgaacctcggacact 15208594  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 19963811 - 19963857
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 285  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  19963811 attgcatattatatgcaggggtcggggttcgaacctcggacacttca 19963857  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 33530822 - 33530856
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    ||||||||||||||||||||| |||||||||||||    
T  33530822 attgcatattatatgtagggatcggggttcgaacc 33530856  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 42395256 - 42395289
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaac 272  Q
    |||||||||||||||||||| |||||||||||||    
T  42395256 attgcatattatatgtaggggccggggttcgaac 42395289  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 38179286 - 38179223
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 302  Q
    ||||||| ||||||| |||| | ||||||||||||||| ||||| || | ||||||||||||||    
T  38179286 attgcattttatatgcaggggctggggttcgaacctcggacactccacaattaaattgtgtgag 38179223  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 1844846 - 1844888
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacac 281  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  1844846 attgcatattatatgcaggggccggggttcgaacctcggacac 1844888  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 20528213 - 20528163
Alignment:
Q  242 gcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaa 292  Q
    |||| |||||||||||||| ||||||||||||||  |||||||| ||||||    
T  20528213 gcatgttatatgtagggactggggttcgaacctcagacacttcacatttaa 20528163  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 44948625 - 44948659
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    ||||||||||||||| |||||||||||||||||||    
T  44948625 attgcatattatatgcagggaccggggttcgaacc 44948659  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 32084873 - 32084905
Alignment:
Q  241 tgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||| ||||||||||||||    
T  32084873 tgcatattatatgtaggggccggggttcgaacc 32084905  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 32288408 - 32288444
Alignment:
Q  245 tattatatgtagggaccggggttcgaacctcgtacac 281  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  32288408 tattatatgtagggatcggggttcgaacctcggacac 32288444  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 14349673 - 14349716
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    ||||||||||||||||||||| ||||||||||||| || |||||    
T  14349673 attgcatattatatgtagggatcggggttcgaaccccggacact 14349716  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 33033155 - 33033189
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    ||||||||||||||| |||||||||||||||||||    
T  33033155 attgcatattatatgcagggaccggggttcgaacc 33033189  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 42054362 - 42054396
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  42054362 attgcatattatatgtaggggccggggttcgaacc 42054396  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 35195678 - 35195637
Alignment:
Q  241 tgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||    
T  35195678 tgcatattatatgcagggaccagggttcgaaccccgtacact 35195637  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 24168642 - 24168614
Alignment:
Q  245 tattatatgtagggaccggggttcgaacc 273  Q
    |||||||||||||||||||||||||||||    
T  24168642 tattatatgtagggaccggggttcgaacc 24168614  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 13773433 - 13773387
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 285  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||    
T  13773433 attgcatattatatgtaggagccggggttcgaaccccggacacttca 13773387  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 43656065 - 43656102
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaacctcg 276  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  43656065 attgcatattatatgtaggggtcggggttcgaacctcg 43656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 14876644 - 14876600
Alignment:
Q  238 aattgcatattatatgtagggaccggggttcgaacctcgtacact 282  Q
    |||||||||||||||| |||  ||||||||||||||||| |||||    
T  14876644 aattgcatattatatgcaggagccggggttcgaacctcggacact 14876600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 14709061 - 14709028
Alignment:
Q  239 attgcatattatatgtagggaccggggttcgaac 272  Q
    |||||||||||||||||||| |||||||||||||    
T  14709061 attgcatattatatgtaggggccggggttcgaac 14709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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