View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825-Insertion-12 (Length: 236)
Name: NF0825-Insertion-12
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 340804 - 341032
Alignment:
| Q |
8 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340804 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
340903 |
T |
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| Q |
108 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
207 |
Q |
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| T |
340904 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
341003 |
T |
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| Q |
208 |
tttgaagcttttcaagagaagataattca |
236 |
Q |
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| T |
341004 |
tttgaagcttttcaagagaagataattca |
341032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 336766 - 336994
Alignment:
| Q |
8 |
ggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcg |
107 |
Q |
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|||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |||||| |
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| T |
336766 |
ggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcg |
336865 |
T |
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| Q |
108 |
tgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
207 |
Q |
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| T |
336866 |
tgaaacgttccaaccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagc |
336965 |
T |
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| Q |
208 |
tttgaagcttttcaagagaagataattca |
236 |
Q |
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| T |
336966 |
tttgaagcttttcaagagaaaatcattca |
336994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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