View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825-Insertion-2 (Length: 987)

Name: NF0825-Insertion-2
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825-Insertion-2
NF0825-Insertion-2
[»] chr7 (1 HSPs)
chr7 (7-981)||(45304798-45305760)
[»] chr6 (1 HSPs)
chr6 (851-901)||(14956488-14956538)


Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 7 - 981
Target Start/End: Complemental strand, 45305760 - 45304798
Alignment:
Q  7 aagaacttggtgtttttatgtccctctttcagccatctgaccttaactctttgactccaatatttttcttctagattcgaatttcatctgattctttctt 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45305760 aagaacttggtgtttttatatccctctttcagccatctgaccttaactctttgactccaatatttttcttctagattcgaatttcatctgattctttctt 45305661  T
Q  107 ctctttgatatttatttgatcaatggtcttaacattaggagcatggattctatttagcttaagtaactcagaactaatttgctctctgcatttgttgaac 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||||    
T  45305660 ctctttgatatttacttgatcaatggtcttaacattaggagcatggatgctatttagcttaagtaactcagaactaatttactctctgcattgtttgaac 45305561  T
Q  207 ttgccatatttttggtgatccc-actggtggatgtagaagagtcctatatattttctcttgatttatctcctttactagggtggcaaatctcttaaatga 305  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  45305560 ttgccatatttttg-tgatccccactggtgcatgtagaagagtcctatatattttctcttgatttatctcctttactagactgccaaatctcttaaatga 45305462  T
Q  306 tttcccttcact--ttgtccagaaaccaaatttagaggtagnnnnnnnnaacataaatactccttggagtaagctcccctttgaggtgcaagaataggtg 403  Q
    ||||||||||||  |||||||||||||||||||||||||||        ||||||||||||||||||||||||||     ||    ||       |||||    
T  45305461 tttcccttcactctttgtccagaaaccaaatttagaggtagttttttttaacataaatactccttggagtaagctaaatatt----tg-------aggtg 45305373  T
Q  404 caagaataggcgcaagaattgggctagtcgaggaagcatatctctattaatacccgaacaaatcactctaatcaagatcaaagtcataattgatacacat 503  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45305372 caagaataggcgcaagaattggcatagtcgaggaagcatatctctattaatacccgaacaaatcactctaatcaagatcaaagtcataattgatacacat 45305273  T
Q  504 aaacctataaaactagttaggtatgttaaatggggcaaccatttagaggagacttcatgatttgatttccgctacgaaaaaattgttaggtttctgcttt 603  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45305272 aaacctataaaactagttaggtatgttaaat-gggcaaccatttagaggagacttcatgatttgatttccgctacgaaaaaattgttaggtttctgcttt 45305174  T
Q  604 aggtctgggcttactggggcatatgggaagagttcttc-aaaataagcatgatcaacccaatatggggaggaaaattatggatcccagtgagaaaaggtt 702  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  45305173 aggtctgggcttact-gggcatat-ggaagagttcttcaaaaataagcatgatcaacccaatat-gggaggaaaattatggatcacagtgagaaaaggtt 45305077  T
Q  703 tgggcaataatcccataaagtccacaagctatagtagttaccgcccaataacctcagggatagaagccatcatatggtaacctgggccccaagagtcctt 802  Q
    | ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  45305076 t-ggcaataatccaataaagtccacaagctatagtagttacagctcaataacctcagggatagaagcaatcatatggtaacatgggccccaagagtcctt 45304978  T
Q  803 tctataaggagaggaaaaccctggatgacagc-acacagggatggcggttagttaaaaattcctccaacataccaaagatagaaagtctcctaggagagg 901  Q
    |||||||||||||||||||| || |||||||| ||||| |||  |  |||||| |||||||| || ||||||| |||||||||||| ||||||||||| |    
T  45304977 tctataaggagaggaaaaccatgtatgacagcaacacaaggaatgatgttagtcaaaaattcatcaaacatacaaaagatagaaagcctcctaggaga-g 45304879  T
Q  902 ttgggctagcattcctgaagctaatttcttg-aaccgtcggggggtgggacaccccctga-catgagaagtcaaggccttaa 981  Q
    || |||||||| || ||||||| |||||||| |||||||| ||| ||||||| ||||||| |||||||||||||| ||||||    
T  45304878 tttggctagcaatcatgaagcttatttcttgaaaccgtcgtgggttgggaca-cccctgaccatgagaagtcaagcccttaa 45304798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 901
Target Start/End: Original strand, 14956488 - 14956538
Alignment:
Q  851 tagttaaaaattcctccaacataccaaagatagaaagtctcctaggagagg 901  Q
    |||| ||||||||  ||||||||| |||||||||||| |||||||||||||    
T  14956488 tagtaaaaaattcgcccaacatacaaaagatagaaagcctcctaggagagg 14956538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4964 times since January 2019
Visitors: 5753