View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825-Insertion-4 (Length: 901)
Name: NF0825-Insertion-4
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Complemental strand, 33127321 - 33126836
Alignment:
| Q |
6 |
catgtctttggtgtggaacatggttcaaagtttatgcttgtaatccaaacttacttattgatatatgtagttttggtggtttagctcttttcaggaacaa |
105 |
Q |
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| T |
33127321 |
catgtctttggtgtggaacatggttcaaaatttatgcttgtaatccaaacttgcttattgatatatgtagttttggtggtttagctcttttcaggaacaa |
33127222 |
T |
|
| Q |
106 |
ccaatggaggtgaaagtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagc |
205 |
Q |
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| T |
33127221 |
ccaatggaggtgaaagtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagc |
33127122 |
T |
|
| Q |
206 |
taaatataaaatcaatgattgaattttaaaaattgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattatcctgat |
305 |
Q |
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| T |
33127121 |
taaatataaaatc-----------------aattgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgat |
33127039 |
T |
|
| Q |
306 |
tttagttaatctaagaatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcaga |
405 |
Q |
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| T |
33127038 |
tttagttaatctaagaatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcaga |
33126939 |
T |
|
| Q |
406 |
tttaaaagtatcatttaatgnnnnnnnnaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagcttcaattattataagaa |
505 |
Q |
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| T |
33126938 |
tttaaaagtatcatttaatgttttttttaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagtttcaattattataagaa |
33126839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 614 - 901
Target Start/End: Complemental strand, 33126730 - 33126447
Alignment:
| Q |
614 |
gtggttggaccaaacacagcatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
713 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126730 |
gtggttggaccaaacacaacatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
33126631 |
T |
|
| Q |
714 |
tcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacattgtttatctctctgacaattcagttcaacatcgacatca |
813 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
33126630 |
tctttgaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacgttgtttatctctctgacaattcagttcaacatcggcatca |
33126531 |
T |
|
| Q |
814 |
accatgcttcttccttccaatcatcacctttccttccttcttactcctatgacacgaccaatatttctatcttggagtgtttcagcag |
901 |
Q |
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| T |
33126530 |
accatgcttcttccttccaatcatcacctttc----cttcttactcctatgacacggccaatatttcaatcttggagtgtctcagcag |
33126447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 667 - 884
Target Start/End: Complemental strand, 33126223 - 33125990
Alignment:
| Q |
667 |
aggagtagccaatgtagcgtctaaatcatgttgtcttcacaac-----ctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtg |
761 |
Q |
| |
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|||||||| ||||||| |||| |||||||||| ||||||| | |||||||| ||| ||||||||||| || |||| | ||| ||||| ||| | |
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| T |
33126223 |
aggagtagttaatgtagtgtctgaatcatgttggcttcacatcacagcctactcttggaactatattgtcctttctaaaaact-actttggtctattaag |
33126125 |
T |
|
| Q |
762 |
acaacatcaacattgtttatctctctgacaattcagttcaacatcgacatcaaccatgcttcttc--------cttc----caatcatcacctttccttc |
849 |
Q |
| |
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| T |
33126124 |
acaacatcaacgttgtttatctctcggacaatctcgttcaacatcgacaacaaccatgctttttctctcaaatcttctcttcaatcttcacttttccttc |
33126025 |
T |
|
| Q |
850 |
cttcttactcctatgacacgaccaatatttctatc |
884 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||| |
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| T |
33126024 |
cttccgactcctatgacacgatcaatatttctatc |
33125990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 768
Target Start/End: Complemental strand, 37526428 - 37526362
Alignment:
| Q |
702 |
ttcacaacctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacat |
768 |
Q |
| |
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|||||||| ||||||| ||| ||||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
37526428 |
ttcacaacttactcttggaactatattgtcctatcacaaaagctactttggtatgttgtgacaacat |
37526362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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