View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825-Insertion-5 (Length: 852)
Name: NF0825-Insertion-5
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 247 - 617
Target Start/End: Complemental strand, 32003173 - 32002803
Alignment:
| Q |
247 |
ttggaataccgggtaaatctatttgttacaaactcttgaatgatcagctagcttaattaatttccatttgtaagtgatatatattacatataaggtaatc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32003173 |
ttggaataccgggtaaatctatttgttacaaactcttgaatgatcagctagcttaattaatttccatttgtaagtgatatatattgcatataaggtaatc |
32003074 |
T |
|
| Q |
347 |
taatttgaaaagttttgtgattcgtgaccatcatatgaaagagatgtgacaccatatactatctaccatgtgaatataaattataggataggtcacggaa |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32003073 |
taatttgaaaagttttgtgattcgtgactatcatatgaaagagatgtgacaccatatactatctaccatgtgaatataaattataggataggtcacggaa |
32002974 |
T |
|
| Q |
447 |
accattaagtttaccttttaatcacaaaatttgctaatacatgacaaacaagcccctaaacaatagacaaagctagactgttattaaatagttacaagag |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32002973 |
accattaagtttaccttttaatcacaaaatttgctaatacgtgacaaacaagcccctaaacaatagacaaagctagactgttattaaatagttacaaggg |
32002874 |
T |
|
| Q |
547 |
caataaccgtatagtgctaattactctaaattacccattaataattgctttgatgatggaagcacaatgat |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32002873 |
caataaccgtatagtgctaattactctaaattacccattaataattgctttgatgatggaagcacaatgat |
32002803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 652 - 852
Target Start/End: Complemental strand, 32002769 - 32002569
Alignment:
| Q |
652 |
gtatgattaatactaattgtaccattaaagcaagaaaataatgtaggcaatgaagaaaaagaaaggctaaagcactttcattggtcccatacattgtccc |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32002769 |
gtatgattaatactaattgtaccattaaagcaagaaaataatgtaggcaatgaagaaaaagaaaggctaaagcactttcattggtcccatacattgtccc |
32002670 |
T |
|
| Q |
752 |
ctcattagccctttgatgtgataccctaaattannnnnnnnnnnnnnnnnnnnaaatatatttcttccacttctattctattgtcttctctcttctctcc |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32002669 |
ctcattagccctttgatgtgataccctaaattatttttttcatttttagttttaaatatatttcttccacttctattctattgtcttctctcttctctcc |
32002570 |
T |
|
| Q |
852 |
c |
852 |
Q |
| |
|
| |
|
|
| T |
32002569 |
c |
32002569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 32003878 - 32003805
Alignment:
| Q |
8 |
cgtgggatttttcagattaagatactttgaacaattatgcaagcaataacgactattcttccacttgaaccgaa |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32003878 |
cgtgggatttttcagattaagatactttgaacaattatgcaagcaataacgactattcttccacttgaaccgaa |
32003805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 32003788 - 32003746
Alignment:
| Q |
102 |
ccaatactatatatgggttagttaaagaaacatttaaggtgtatt |
146 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32003788 |
ccaatactatat--gggttagttaaagaaacatttaaggtgtatt |
32003746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 32003685 - 32003650
Alignment:
| Q |
204 |
gatgaatttaattcatatacaccgttaatgtaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32003685 |
gatgaatttaattcatatacatcgttaatgtaagtt |
32003650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4918 times since January 2019
Visitors: 5753