View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825-Insertion-6 (Length: 654)
Name: NF0825-Insertion-6
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 35686180 - 35685637
Alignment:
| Q |
8 |
aacagatggaaattttaaa-tattgatg------tatacatcaaattaagttataaaatttactcttcaagcttcatccacttaaaatgcctttcattat |
100 |
Q |
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| T |
35686180 |
aacagatggaaattttaaaatattgatgacttgatatacatcaaattaagttataaaatttactcttcaagcttcatccacttaaaatgcctttcatcat |
35686081 |
T |
|
| Q |
101 |
catccttatatttgaaacaaaaaattaaggaaattattcccaacagctaaagaagaattaagccgcatatctctaagaccagaaatgttgtataatagtg |
200 |
Q |
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| T |
35686080 |
catccttatatttgaaacaaaaaattaaggaaattattcccaacagctaaagaagaattaagccgcatatctctaagaccagaaatgttgtataatagtg |
35685981 |
T |
|
| Q |
201 |
aatctcgggcagcgaaataacaataatagaaaaaacaagtgttgaagatgcaacggatgattaaaaattatgacccgagtataaattcataaccataaaa |
300 |
Q |
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| T |
35685980 |
aatctcgggcagtgaaataacaataatagaaaaaacaagtgttgaagatgcaacggatgattaaaaattatgact-gagtataaattcataaccataaaa |
35685882 |
T |
|
| Q |
301 |
cttaaagaaagaaataaagaacttttccaggatgccaaacctgtttaagaaaatatgcccttttattagaacagatcggacttctgtatgttgtacagct |
400 |
Q |
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| T |
35685881 |
cttaaagaaagaaataaagaacttttccaggatgccaaacctgtttaagaaaatatgcccttttattagaacagatcggacttctgtatgttgtacagct |
35685782 |
T |
|
| Q |
401 |
cccaacaaatcaactcgatcttgaagagaatgcttttctctcatctcctccaaccgtacacgcttaggtccatcacctccaataatgaaatgaaccttga |
500 |
Q |
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| T |
35685781 |
cccaacaaatcaactcgatcttgaagagaatgcttttctctcatctcctccaaccgtacacgcttaggtccatcacctccaataatgaaatgaaccttca |
35685682 |
T |
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| Q |
501 |
aatgggatacataagttatatctttagtgtgtacggttacggtac |
545 |
Q |
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| T |
35685681 |
aatgggatacataagttatatctttagtgtgtacggttacggtac |
35685637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 580 - 654
Target Start/End: Complemental strand, 35685602 - 35685528
Alignment:
| Q |
580 |
acaatttatttggccattatttcacttgattctattaggctcctacataaggaaccaacaaaatagcaacactgg |
654 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685602 |
acaatttatttggcgattatttcacttgattctattaggctcctacataaggaaccaacaaaatagcaacactgg |
35685528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 338 - 498
Target Start/End: Original strand, 40671359 - 40671519
Alignment:
| Q |
338 |
aacctgtttaagaaaatatgcccttttattagaacagatcggacttctgtatgttgtacagctcccaacaaatcaactcgatcttgaagagaatgctttt |
437 |
Q |
| |
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||||| |||||||| |||||||| ||| |||||||||||||| | || |||| | ||||||||||||| |||||||| ||||| | |||||| |||| |
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| T |
40671359 |
aacctatttaagaagatatgcccacgtatcagaacagatcggacctgtgcatgtggcacagctcccaacatttcaactcggtcttgtaaagaatgttttt |
40671458 |
T |
|
| Q |
438 |
ctctcatctcctccaaccgtacacgcttaggtccatcacctccaataatgaaatgaacctt |
498 |
Q |
| |
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|||||||||| |||||||| |||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
40671459 |
ctctcatctcttccaaccgcacacgcttagctccatcacctccaacaatgaaacgaacctt |
40671519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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