View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825-Insertion-7 (Length: 552)
Name: NF0825-Insertion-7
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Original strand, 43410661 - 43411235
Alignment:
| Q |
8 |
gaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaaca |
107 |
Q |
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| T |
43410661 |
gaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaaca |
43410760 |
T |
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| Q |
108 |
gatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacat |
207 |
Q |
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| T |
43410761 |
gatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacat |
43410860 |
T |
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| Q |
208 |
catctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc--- |
304 |
Q |
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| T |
43410861 |
catctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctccta |
43410960 |
T |
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| Q |
305 |
-ctagctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataaca |
388 |
Q |
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| T |
43410961 |
gctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataaca |
43411060 |
T |
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| Q |
389 |
tcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaatt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
43411061 |
tcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaatt |
43411160 |
T |
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| Q |
489 |
agagttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttg |
552 |
Q |
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| T |
43411161 |
agagttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttg |
43411235 |
T |
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