View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825-Insertion-8 (Length: 546)
Name: NF0825-Insertion-8
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825-Insertion-8 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 107 - 546
Target Start/End: Original strand, 45363588 - 45364014
Alignment:
| Q |
107 |
gaagctgcaaggatttgcaggtagagaaatgcaggaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata |
206 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
45363588 |
gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaata |
45363682 |
T |
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| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45363683 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga |
45363774 |
T |
|
| Q |
307 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363775 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
45363874 |
T |
|
| Q |
407 |
tattagagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgcca |
506 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45363875 |
tattagagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcacca |
45363974 |
T |
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| Q |
507 |
cataatcatttccagtcataacagaagccaagcacgggag |
546 |
Q |
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| T |
45363975 |
cataatcatttccaatcataacagaagccaagcacgggag |
45364014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 107 - 546
Target Start/End: Original strand, 45382407 - 45382833
Alignment:
| Q |
107 |
gaagctgcaaggatttgcaggtagagaaatgcaggaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata |
206 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
45382407 |
gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaata |
45382501 |
T |
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| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45382502 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga |
45382593 |
T |
|
| Q |
307 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382594 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
45382693 |
T |
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| Q |
407 |
tattagagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgcca |
506 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45382694 |
tattagagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcacca |
45382793 |
T |
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| Q |
507 |
cataatcatttccagtcataacagaagccaagcacgggag |
546 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
45382794 |
cataatcatttccaatcataacagaagccaagcacgggag |
45382833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 207 - 546
Target Start/End: Original strand, 45374923 - 45375254
Alignment:
| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45374923 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga |
45375014 |
T |
|
| Q |
307 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375015 |
gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta |
45375114 |
T |
|
| Q |
407 |
tattagagttcatctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgcca |
506 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45375115 |
tattagagttcatctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcacca |
45375214 |
T |
|
| Q |
507 |
cataatcatttccagtcataacagaagccaagcacgggag |
546 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
45375215 |
cataatcatttccaatcataacagaagccaagcacgggag |
45375254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 45354109 - 45354298
Alignment:
| Q |
107 |
gaagctgcaaggatttgcaggtagagaaatgcaggaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata |
206 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45354109 |
gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata |
45354203 |
T |
|
| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45354204 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga |
45354295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 45356670 - 45356859
Alignment:
| Q |
107 |
gaagctgcaaggatttgcaggtagagaaatgcaggaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata |
206 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45356670 |
gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata |
45356764 |
T |
|
| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45356765 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga |
45356856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 45370411 - 45370600
Alignment:
| Q |
107 |
gaagctgcaaggatttgcaggtagagaaatgcaggaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45370411 |
gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata |
45370505 |
T |
|
| Q |
207 |
caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45370506 |
caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga |
45370597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 45342044 - 45342130
Alignment:
| Q |
465 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccagt-----cataacagaagccaagcacgggag |
546 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
45342044 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacacaacagaagccaagcacgggag |
45342130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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