View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_high_10 (Length: 265)
Name: NF0825_high_10
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28752771 - 28752536
Alignment:
| Q |
1 |
aagcatttctgatgaggagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752771 |
aagcatttctgatgaggagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaa |
28752672 |
T |
|
| Q |
101 |
gaatccaatggaaatctcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752671 |
gaatccaatggaaatctcggatcagaaccttccaactatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggatt |
28752572 |
T |
|
| Q |
201 |
cggttccttcaacagcggatctcaacaagatctttg |
236 |
Q |
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| T |
28752571 |
cagttccttcaacagcggatctcaacaagatctttg |
28752536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44865982 - 44866217
Alignment:
| Q |
1 |
aagcatttctgatgaggagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaa |
100 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
44865982 |
aagcatttctgaagaggagacactgttgaaaaaccagaatgaaagagatgaacttatgcccgctgccgaaattagccctggtttgggtttaatgcatcaa |
44866081 |
T |
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| Q |
101 |
gaatccaatggaaatctcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggatt |
200 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
44866082 |
gaaaccaatggaaatcttggatcagaaccttccaaccatgtggaacatgtgaacgatagttctccaacttctcttactctgaaatttacaaacttggatt |
44866181 |
T |
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| Q |
201 |
cggttccttcaacagcggatctcaacaagatctttg |
236 |
Q |
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| |||||| ||||| ||||||||||||||||||||| |
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| T |
44866182 |
cagttcctacaacaacggatctcaacaagatctttg |
44866217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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