View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_high_15 (Length: 251)
Name: NF0825_high_15
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_high_15 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 4223187 - 4222949
Alignment:
| Q |
13 |
aatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgtttttatatgacaatgcttcttattc |
112 |
Q |
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| T |
4223187 |
aatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgtttttatatgacaatgcttcttattc |
4223088 |
T |
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| Q |
113 |
tgatatttcttaacatatagttgcagccaacggacctgaaattatcgccgaatggaaaacaaggatgaaaagatgctcacctcaagcgacatactattac |
212 |
Q |
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| T |
4223087 |
tgatatttctgaacatatacttgcagctaacggacctgaaattatcgccgaatggaaaacaaggatgaaaagatgctcacctcaagcgacatactattac |
4222988 |
T |
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| Q |
213 |
atgagtaaacaaatcctcacatcgcagatttgttcttat |
251 |
Q |
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| T |
4222987 |
atgagtaaacaaatcctcacatcgcagatttgttcttat |
4222949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 3822122 - 3822044
Alignment:
| Q |
13 |
aatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
91 |
Q |
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| T |
3822122 |
aatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattcttttt |
3822044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3803828 - 3803773
Alignment:
| Q |
26 |
aatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttag |
81 |
Q |
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| T |
3803828 |
aatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttag |
3803773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 3812457 - 3812406
Alignment:
| Q |
40 |
caatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
91 |
Q |
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| T |
3812457 |
caatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
3812406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 3907859 - 3907914
Alignment:
| Q |
188 |
ctcacctcaagcgacatactattacatgagtaaacaaatcctcacatcgcagattt |
243 |
Q |
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| T |
3907859 |
ctcacctcaagcaacatactattggatgagcaaacaaatcctcacatcacagattt |
3907914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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