View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_high_16 (Length: 251)
Name: NF0825_high_16
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 28533127 - 28533006
Alignment:
| Q |
16 |
atgcagacaaagaacacatgatggttgatcacatagtttggccgattgtgtctacctctcaaacttttaatcgaacttgagaatttacattgtacagatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28533127 |
atgcagacaaagaacacatgatggttgatcacatagtttggccgattgtgtctacctctcaaacttttaatcgaacttaggaatttacattgtacagatt |
28533028 |
T |
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| Q |
116 |
gcatttacaatattatccctga |
137 |
Q |
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| T |
28533027 |
gcatttacaatattatccctga |
28533006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 28532967 - 28532855
Alignment:
| Q |
139 |
cacatgtgaatgcaaagaccaaagtgnnnnnnnnnnnntatgcttattttgttacctggtccatgaatggtcttttagaggacatgtggtggatacatct |
238 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28532967 |
cacatgtgaatgcaaagaccaaagtgaaaaagaaaaaatatgcttattttgttacctggtccatgaatggtctttttgaggacatgtggtggatacatct |
28532868 |
T |
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| Q |
239 |
ggaagctgttgcc |
251 |
Q |
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||||||||||||| |
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| T |
28532867 |
ggaagctgttgcc |
28532855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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