View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_high_18 (Length: 243)

Name: NF0825_high_18
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_high_18
NF0825_high_18
[»] chr6 (4 HSPs)
chr6 (148-228)||(32641480-32641560)
chr6 (17-81)||(32641627-32641691)
chr6 (148-228)||(32643250-32643330)
chr6 (28-79)||(32643138-32643189)
[»] chr5 (2 HSPs)
chr5 (148-228)||(8699069-8699149)
chr5 (45-81)||(8699208-8699244)
[»] chr3 (6 HSPs)
chr3 (148-225)||(30252740-30252817)
chr3 (148-221)||(42804604-42804677)
chr3 (14-81)||(30252854-30252921)
chr3 (36-81)||(42804714-42804759)
chr3 (14-59)||(4005192-4005240)
chr3 (14-55)||(49266154-49266195)
[»] chr7 (3 HSPs)
chr7 (148-228)||(9491607-9491687)
chr7 (149-228)||(47669802-47669884)
chr7 (28-72)||(9491754-9491798)
[»] chr1 (2 HSPs)
chr1 (148-227)||(49854635-49854715)
chr1 (35-81)||(49854774-49854820)
[»] scaffold0155 (2 HSPs)
scaffold0155 (148-227)||(12709-12789)
scaffold0155 (32-81)||(12601-12650)
[»] chr2 (4 HSPs)
chr2 (148-224)||(40538895-40538971)
chr2 (14-55)||(36653285-36653326)
chr2 (14-55)||(39950715-39950756)
chr2 (148-227)||(22443305-22443383)
[»] chr4 (3 HSPs)
chr4 (148-218)||(10729606-10729676)
chr4 (148-218)||(10943375-10943445)
chr4 (28-74)||(13624297-13624343)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 32641560 - 32641480
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 228  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641560 cattggttcattagtttcttcgtttaatcagtgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 32641480  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 32641691 - 32641627
Alignment:
Q  17 ccgaggaggaggcaccagcaggaccaggaccagcagtaggattatgacttgttttttacttttcg 81  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32641691 ccgaggaggaggcaccagtaggaccaggaccaacagtaggattatgacttgttttttacttttcg 32641627  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 32643250 - 32643330
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 228  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||| || ||||||||||    
T  32643250 cattggttcattagtttcttcgtttaatcattgtttgttaaatttagccaatttttttttgtcattttaatcattatgcgt 32643330  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 32643138 - 32643189
Alignment:
Q  28 gcaccagcaggaccaggaccagcagtaggattatgacttgttttttactttt 79  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32643138 gcaccagcaggaccaggaccagcagtaggattaggacttgttttttactttt 32643189  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 8699149 - 8699069
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 228  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8699149 cattggttcattagtttcttcgtttaatcagtgtttgttaaattgagccaattttgtttttccatttgaaccattatgcgt 8699069  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 8699244 - 8699208
Alignment:
Q  45 accagcagtaggattatgacttgttttttacttttcg 81  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8699244 accagcagtaggattaggacttgttttttacttttcg 8699208  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 30252817 - 30252740
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattatg 225  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30252817 cattggttcattagtttgttcgtttaatcagtgtttgttaaattgagccaattttgttttgccatttgaaccattatg 30252740  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 42804677 - 42804604
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccat 221  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42804677 cattggttcattactttgttcgtttaatcagtgtttgttaaattgagccaattttgttttgccatttgaaccat 42804604  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 30252921 - 30252854
Alignment:
Q  14 aggccgaggaggaggcaccagcaggaccaggaccagcagtaggattatgacttgttttttacttttcg 81  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30252921 aggccgaggaggaggcaccagcaggaccaggaccagctgtaggattaggacttgttttttacttttcg 30252854  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 42804759 - 42804714
Alignment:
Q  36 aggaccaggaccagcagtaggattatgacttgttttttacttttcg 81  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42804759 aggaccaggaccagcagtaggattaggacttgttttttacttttcg 42804714  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 4005240 - 4005192
Alignment:
Q  14 aggccgaggaggaggcacca---gcaggaccaggaccagcagtaggatt 59  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||||    
T  4005240 aggccgaggaggaggcaccatcagcaggaccaggaccagtagtaggatt 4005192  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 49266195 - 49266154
Alignment:
Q  14 aggccgaggaggaggcaccagcaggaccaggaccagcagtag 55  Q
    ||||||||||||||||||| ||| |||||||||||| |||||    
T  49266195 aggccgaggaggaggcaccggcatgaccaggaccagtagtag 49266154  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 9491687 - 9491607
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 228  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9491687 cattggttcattagtttgttagtttaatcagtgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 9491607  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 47669884 - 47669802
Alignment:
Q  149 attggttcattagtttcttcgtttaat---caatgtttgttaaattgagccaattttgttttgccatttgaaccattatgcgt 228  Q
    |||||||||||||||||||||||||||   || ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  47669884 attggttcattagtttcttcgtttaataatcagtgtttgttaatatgagccaattttgttttgccatttgaaccattatgcgt 47669802  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 9491798 - 9491754
Alignment:
Q  28 gcaccagcaggaccaggaccagcagtaggattatgacttgttttt 72  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  9491798 gcaccagcaggaccatgaccagcagtaggattaggacttgttttt 9491754  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 49854715 - 49854635
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaac-cattatgcg 227  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  49854715 cattggttcattagtttgttcgtttaatcagtgtttgttaaattgagccaattttgttttgtcatttgaacacattatgcg 49854635  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 49854820 - 49854774
Alignment:
Q  35 caggaccaggaccagcagtaggattatgacttgttttttacttttcg 81  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  49854820 caggaccaggaccagcagtaggattaggacttgtttcttacttttcg 49854774  T

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Target: scaffold0155 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 12709 - 12789
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaac-cattatgcg 227  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||||    
T  12709 cattggttcattagtttgttcgtttaatcaatctttgtttaattgagccaattttgttttaccatttgaacacattatgcg 12789  T

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Target: scaffold0155; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 12601 - 12650
Alignment:
Q  32 cagcaggaccaggaccagcagtaggattatgacttgttttttacttttcg 81  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  12601 cagcacgaccaggaccagcagtaggattaggacttattttttacttttcg 12650  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 40538895 - 40538971
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaaccattat 224  Q
    |||||||||||||||||||||||||||| | ||||||||||  ||||||||||||||||||||| ||||||||||||    
T  40538895 cattggttcattagtttcttcgtttaataagtgtttgttaacatgagccaattttgttttgccaattgaaccattat 40538971  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 36653326 - 36653285
Alignment:
Q  14 aggccgaggaggaggcaccagcaggaccaggaccagcagtag 55  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  36653326 aggccgaggaggaggcaccagcaggaccaggaccagtagtag 36653285  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 39950715 - 39950756
Alignment:
Q  14 aggccgaggaggaggcaccagcaggaccaggaccagcagtag 55  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  39950715 aggccgaggaggaggcaccagcaggatcaggaccagtagtag 39950756  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 22443305 - 22443383
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaac-cattatgcg 227  Q
    |||||||||||| |||| || ||||||||||   |||| || || ||||||||||||||| |||||||||| |||||||||    
T  22443305 cattggttcattggtttgttggtttaatcaag--ttgtgaatttaagccaattttgtttttccatttgaacacattatgcg 22443383  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 10729676 - 10729606
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaac 218  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  10729676 cattggttcattagtttgttcgtttaattaatgtttcttgaattgagccaattttgttttgccatttgaac 10729606  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 10943445 - 10943375
Alignment:
Q  148 cattggttcattagtttcttcgtttaatcaatgtttgttaaattgagccaattttgttttgccatttgaac 218  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  10943445 cattggttcattagtttgttcgtttaattaatgtttcttgaattgagccaattttgttttgccatttgaac 10943375  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 13624343 - 13624297
Alignment:
Q  28 gcaccagcaggaccaggaccagcagtaggattatgacttgtttttta 74  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  13624343 gcaccagcaggactaggacaagcagtatgattatgacttgtttttta 13624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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