View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_1 (Length: 687)

Name: NF0825_low_1
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_1
NF0825_low_1
[»] chr1 (10 HSPs)
chr1 (68-353)||(25867301-25867586)
chr1 (73-367)||(16961443-16961731)
chr1 (510-658)||(16961149-16961298)
chr1 (510-658)||(25868611-25868760)
chr1 (73-146)||(35161958-35162031)
chr1 (68-187)||(29395401-29395520)
chr1 (68-187)||(30410805-30410924)
chr1 (67-151)||(28549352-28549436)
chr1 (73-151)||(41866988-41867066)
chr1 (73-105)||(17962971-17963003)
[»] chr3 (7 HSPs)
chr3 (73-366)||(46595567-46595848)
chr3 (510-655)||(46595279-46595425)
chr3 (10-70)||(34726106-34726166)
chr3 (73-150)||(30766027-30766104)
chr3 (73-187)||(4865124-4865238)
chr3 (73-187)||(55041464-55041578)
chr3 (73-105)||(37267567-37267599)
[»] chr6 (9 HSPs)
chr6 (73-366)||(4434991-4435272)
chr6 (73-259)||(28057050-28057236)
chr6 (201-365)||(4091500-4091664)
chr6 (510-655)||(4435413-4435559)
chr6 (68-201)||(4091336-4091469)
chr6 (194-346)||(28057249-28057389)
chr6 (73-187)||(11178362-11178476)
chr6 (73-188)||(32444478-32444593)
chr6 (73-187)||(2314426-2314540)
[»] chr4 (3 HSPs)
chr4 (74-341)||(47520776-47521044)
chr4 (73-143)||(7131306-7131376)
chr4 (73-151)||(34703771-34703849)
[»] chr5 (7 HSPs)
chr5 (73-367)||(37719805-37720087)
chr5 (510-658)||(37719518-37719666)
chr5 (77-187)||(9263603-9263713)
chr5 (74-201)||(30441237-30441367)
chr5 (534-655)||(30440739-30440855)
chr5 (247-295)||(30441054-30441102)
chr5 (73-105)||(41290053-41290085)
[»] chr7 (4 HSPs)
chr7 (73-192)||(20389918-20390037)
chr7 (73-146)||(5790551-5790624)
chr7 (68-146)||(13946646-13946724)
chr7 (68-145)||(34575597-34575674)
[»] chr8 (3 HSPs)
chr8 (68-146)||(1662577-1662655)
chr8 (73-187)||(1605267-1605381)
chr8 (74-105)||(11075265-11075296)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 68 - 353
Target Start/End: Original strand, 25867301 - 25867586
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatg 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25867301 aatccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaattctatgttttgagcgggaaaattttgctaatacctcacttaatg 25867400  T
Q  168 ccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaa 267  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25867401 cctttttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaa 25867500  T
Q  268 gttaaaagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattccccttctccttatatcacacactc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||    
T  25867501 gttaaaagtaacatcgtaaatgacaaatatagtctatgatgcaattccaatgcattacattcccattatccttatatcacacactc 25867586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 367
Target Start/End: Complemental strand, 16961731 - 16961443
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16961731 ttatcatctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 16961632  T
Q  173 ttcaaatttcaaatcccttcactatatgc-atttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagtta 271  Q
    |||||||       ||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  16961631 ttcaaat-------cccttcactatatgccatttaaagcattacatatttctcatgcacatttatatggttgtgtataaagcagttcccatgtaaagtta 16961539  T
Q  272 aaagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattccccttctccttatatcacacactcaatgcctcttaacc 367  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  16961538 aaagtaacattgtaaatgacaaatatagtctatgatgcggttccaatgcattacattcccgttatccttatatcacacgctcaatgcctcttaacc 16961443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 510 - 658
Target Start/End: Complemental strand, 16961298 - 16961149
Alignment:
Q  510 tcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccaga 608  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||    
T  16961298 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 16961199  T
Q  609 tctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaac 658  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  16961198 tctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaac 16961149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 510 - 658
Target Start/End: Original strand, 25868611 - 25868760
Alignment:
Q  510 tcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccaga 608  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||    
T  25868611 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatattcatctcgcatcaaatccaga 25868710  T
Q  609 tctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaac 658  Q
    ||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  25868711 tctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaac 25868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 35161958 - 35162031
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaatt 146  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||  | ||||||||||||||||    
T  35161958 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaatt 35162031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 29395520 - 29395401
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatg 167  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  |||||||||||| |  | |||||||||||||||| || |   ||| || ||||||    
T  29395520 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtgatttaaccacatttaatg 29395421  T
Q  168 ccattttcaaatttcaaatc 187  Q
     ||||||  |||||||||||    
T  29395420 acatttttgaatttcaaatc 29395401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 30410924 - 30410805
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatg 167  Q
    |||| |||||||||||| ||||||||||||||| |||| |  |  ||||||||||||||  | |||||||||||||||| || |   ||| || ||||||    
T  30410924 aatccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaatg 30410825  T
Q  168 ccattttcaaatttcaaatc 187  Q
     ||||||  |||||||||||    
T  30410824 gcatttttgaatttcaaatc 30410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 28549436 - 28549352
Alignment:
Q  67 caatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgct 151  Q
    ||||| ||||| |||||||||||  ||||||||| |||| || |  ||||||||||||||   ||||||||||||||| ||||||    
T  28549436 caatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgct 28549352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 41866988 - 41867066
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgct 151  Q
    ||||| |||||||||||  ||||||||| |||| || |  ||||||||||||||   ||||||||||||||| ||||||    
T  41866988 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgct 41867066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 17963003 - 17962971
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaa 105  Q
    |||||||||||||||||||||||| ||||||||    
T  17963003 ttattatctaatcctaaactacaacgcaaacaa 17962971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 73 - 366
Target Start/End: Complemental strand, 46595848 - 46595567
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46595848 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcaggaaaattttgctaatacctcacttaatgccatt 46595749  T
Q  173 ttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaa 272  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||                 
T  46595748 ttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtacatttatatggttgtgtataaagcagttcc------------- 46595662  T
Q  273 aagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattccccttctccttatatcacacactcaatgcctcttaac 366  Q
    |||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46595661 aagtaacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattccccttatccttatatcacacactcaatgcctcttaac 46595567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 510 - 655
Target Start/End: Complemental strand, 46595425 - 46595279
Alignment:
Q  510 tcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccaga 608  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  46595425 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 46595326  T
Q  609 tctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaa 655  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  46595325 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaa 46595279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 34726166 - 34726106
Alignment:
Q  10 aagaatatgaacacggtgcaggcctcttaatctcagcataatagcagagaaggaaaacaat 70  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34726166 aagaaaatgaacacggtgaaggcctcttaatctcagcataatagcagagaaggaaaacaat 34726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 30766104 - 30766027
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg-ttttgagcgggaaaattttgc 150  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| |||||||||||||||||    
T  30766104 ttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaat-ctatgatttagagcgggaaaattttgc 30766027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 4865124 - 4865238
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||  |||||||||||||||||| || |   ||| || |||||| ||||    
T  4865124 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatggcatt 4865223  T
Q  173 ttcaaatttcaaatc 187  Q
    ||  |||||||||||    
T  4865224 tttgaatttcaaatc 4865238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 55041578 - 55041464
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||  | |||||||||||||||| || |   ||| || |||||| ||||    
T  55041578 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaatggcatt 55041479  T
Q  173 ttcaaatttcaaatc 187  Q
    ||  |||||||||||    
T  55041478 tttgaatttcaaatc 55041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 37267599 - 37267567
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaa 105  Q
    |||||||||||||||||||||||||||||||||    
T  37267599 ttattatctaatcctaaactacaatgcaaacaa 37267567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 73 - 366
Target Start/End: Original strand, 4434991 - 4435272
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4434991 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgtcatt 4435090  T
Q  173 ttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaa 272  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||                 
T  4435091 ttcaaatttcaaatcccttcactatatgcatttaaagcgttacatatttcccatgtacatttacatggttgtgtataaagcagttcc------------- 4435177  T
Q  273 aagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattccccttctccttatatcacacactcaatgcctcttaac 366  Q
    || ||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4435178 aaataacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattccccttatccttatatcacacactcaatgcctcttaac 4435272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 28057050 - 28057236
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28057050 ttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 28057149  T
Q  173 ttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc 259  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28057150 ttcaaatttcaaatcccttctctatatgcatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc 28057236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 201 - 365
Target Start/End: Original strand, 4091500 - 4091664
Alignment:
Q  201 catttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagt 300  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  4091500 catttaaagcattacatatttcccatgcacatttatatggttgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaatatagt 4091599  T
Q  301 ctatgatgcagttccgatgcattacattccccttctccttatatcacacactcaatgcctcttaa 365  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||  ||||||||||||||    
T  4091600 ctatgatgcagttccaatgcattacattcccgttatccttatatcacacgttcaatgcctcttaa 4091664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 510 - 655
Target Start/End: Original strand, 4435413 - 4435559
Alignment:
Q  510 tcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccaga 608  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  4435413 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 4435512  T
Q  609 tctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaa 655  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4435513 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaa 4435559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 4091336 - 4091469
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatg 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4091336 aatccttattatctaatcctaaactacaatgcaaacaaaacatgcaaaaccctaatcctatgttttgagcgggaaaattttgttaatacctcacttaatg 4091435  T
Q  168 ccattttcaaatttcaaatcccttcactatatgc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  4091436 ccattttcaaatttcaaatcccttcactatatgc 4091469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 28057389 - 28057249
Alignment:
Q  194 ctatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaa 293  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  28057389 ctatatgcatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaa 28057303  T
Q  294 ata-tagtctatgatgcagttccgatgcattacattccccttctccttatatca 346  Q
    ||| || |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  28057302 atattaatctatgatgcggttccaatgcattacattccccttatccttatatca 28057249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 11178362 - 11178476
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |  ||||   ||||||||||||||||||    
T  11178362 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatgttttgagtgggaaactaatgctttaacctcacttaatgccatt 11178461  T
Q  173 ttcaaatttcaaatc 187  Q
    ||  |||||||||||    
T  11178462 tttgaatttcaaatc 11178476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 32444478 - 32444593
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| |  ||||   ||||||||||||||||||    
T  32444478 ttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatcctaagttttgagcgggaaactaatgctttaacctcacttaatgccatt 32444577  T
Q  173 ttcaaatttcaaatcc 188  Q
    ||  ||||||||||||    
T  32444578 tttgaatttcaaatcc 32444593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 2314540 - 2314426
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |  ||||   |||| |||||||||||||    
T  2314540 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccatt 2314441  T
Q  173 ttcaaatttcaaatc 187  Q
    ||  |||||||||||    
T  2314440 ttttaatttcaaatc 2314426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 47520776 - 47521044
Alignment:
Q  74 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattt 173  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47520776 tattatctaatcctaaactacaatataaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgtcattt 47520875  T
Q  174 tcaaatttcaaatcccttcactatatg-catttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaa 272  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  47520876 tcaaatttcaaatcccttcactatatgccatttaaagcattacatatttcccatgcacatttatatggttgtgtataaagcagttccgatgtaaagttaa 47520975  T
Q  273 aagtaacatcgtaaatgacaaatatagtctatgatgcagttccgatgcattacattccccttctcctta 341  Q
    ||||||||| ||||||||||||||||||||||| ||| ||| | ||||||||||||||| || ||||||    
T  47520976 aagtaacattgtaaatgacaaatatagtctatgttgcggtttcaatgcattacattcccgttatcctta 47521044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 7131306 - 7131376
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaa 143  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||| | || |||||| ||||||    
T  7131306 ttattacctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcttttgatttgagtgggaaa 7131376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 34703771 - 34703849
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgct 151  Q
    ||||| |||||||||||  ||||||||| |||| || |  ||||||||||||||   ||||||||||||||| ||||||    
T  34703771 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgct 34703849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 73 - 367
Target Start/End: Complemental strand, 37720087 - 37719805
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  37720087 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatattttgagcgggaagattttgctaatacctcacttaatgtcatt 37719988  T
Q  173 ttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttcccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaa 272  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  37719987 ttcaaatttcaaatcccttcactgtatgtatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc------------- 37719901  T
Q  273 aagtaacatcgtaaatgacaaata-tagtctatgatgcagttccgatgcattacattccccttctccttatatcacacactcaatgcctcttaacc 367  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  37719900 aagtaacatcgtaaatgacaaatattagtctatgatacggttccaatgcattacattccccttatccttatatcacacacttaatgcctcttaacc 37719805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 510 - 658
Target Start/End: Complemental strand, 37719666 - 37719518
Alignment:
Q  510 tcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattca-ctagcatcaaatccaga 608  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  37719666 tcatcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 37719567  T
Q  609 tctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaac 658  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  37719566 tctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaac 37719518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 9263713 - 9263603
Alignment:
Q  77 tatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttca 176  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |  ||||   |||| |||||||||||||||      
T  9263713 tatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccatttttg 9263614  T
Q  177 aatttcaaatc 187  Q
    |||||||||||    
T  9263613 aatttcaaatc 9263603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 30441367 - 30441237
Alignment:
Q  74 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatac---ctcacttaatgcca 170  Q
    ||||||||||||||||  ||||||||| |||| || ||||||||||||| ||||  ||| |||||||||| |||||||||||    | || |||||||||    
T  30441367 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaacctagatttagagcgggaaacttttgctaataatatcacatttaatgcca 30441268  T
Q  171 ttttcaaatttcaaatcccttcactatatgc 201  Q
    ||||||||||||||||| |||||||||||||    
T  30441267 ttttcaaatttcaaatctcttcactatatgc 30441237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 534 - 655
Target Start/End: Complemental strand, 30440855 - 30440739
Alignment:
Q  534 gccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcactagcatcaaatccagatctcgaaatcctctgcatctcgatc 633  Q
    |||||||| ||||||||||||| |||| ||||||||||| |||||||||||||     ||  ||||||||||||||||| ||||||||| ||||| |||     
T  30440855 gccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcat-----ctcacatcaaatccagatctcaaaatcctctacatctagatt 30440761  T
Q  634 tgttgattttaacccatgaaaa 655  Q
    ||||| ||||||||||||||||    
T  30440760 tgttggttttaacccatgaaaa 30440739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 30441102 - 30441054
Alignment:
Q  247 ataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaat 295  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30441102 ataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 30441054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 41290053 - 41290085
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaa 105  Q
    |||||||||||||||||||||||||| ||||||    
T  41290053 ttattatctaatcctaaactacaatgtaaacaa 41290085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 20389918 - 20390037
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389918 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 20390017  T
Q  173 ttcaaatttcaaatcccttc 192  Q
    ||||||||||||||||||||    
T  20390018 ttcaaatttcaaatcccttc 20390037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 5790624 - 5790551
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaatt 146  Q
    ||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||  |||| ||||||||||||    
T  5790624 ttattatctaatcatgaactacaatgtaaacaaaacttctaaaaccctaatcctagattttaagcgggaaaatt 5790551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 13946646 - 13946724
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaatt 146  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||  ||||||||||||||||||    
T  13946646 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaatt 13946724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 34575597 - 34575674
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaat 145  Q
    |||| ||||||||||||||||| |||||||||| |||| |  |  ||||||||||||||    |||||||||||||||    
T  34575597 aatcattattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaat 34575674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 1662655 - 1662577
Alignment:
Q  68 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaatt 146  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||  | ||||||||||||||||    
T  1662655 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttagatttgagcgggaaaatt 1662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 1605381 - 1605267
Alignment:
Q  73 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccatt 172  Q
    |||||||||||||||||||||| ||||| ||||    | |||||||||||||||   ||| ||||||||||||| |||    ||| ||||||||| ||||    
T  1605381 ttattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgatttagagcgggaaaattatgcattaaccacacttaatgacatt 1605282  T
Q  173 ttcaaatttcaaatc 187  Q
    ||  |||||||||||    
T  1605281 tttgaatttcaaatc 1605267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 105
Target Start/End: Complemental strand, 11075296 - 11075265
Alignment:
Q  74 tattatctaatcctaaactacaatgcaaacaa 105  Q
    ||||||||||||||||||||||||||||||||    
T  11075296 tattatctaatcctaaactacaatgcaaacaa 11075265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4861 times since January 2019
Visitors: 5752