View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_10 (Length: 445)
Name: NF0825_low_10
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 28 - 437
Target Start/End: Original strand, 45305754 - 45306161
Alignment:
| Q |
28 |
agttctttcaccaaaagccttccctaagaaggaagaagaatttcatttctaaaattcatactgataaagaactgattactaataaggaggaagaaattca |
127 |
Q |
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| T |
45305754 |
agttctttcaccaaaagccttccctaagaaggaagaagaatttcatttctaaaattcatactgataaagaactgattactaataaggaggaagaaattca |
45305853 |
T |
|
| Q |
128 |
tacaatgtttatgacatatttatataacattgtctctgtaagagaggtttagtggaagcatatgtttcaggaagctggtcaaatcattgacgttttgttc |
227 |
Q |
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| T |
45305854 |
tacaatgtttatgacatatttatg--acattgtctctgtaagagaggtttagtggaagcatatgtttcaggaagctggtcaaatcattgacgttttgttc |
45305951 |
T |
|
| Q |
228 |
aaatatcatcttcatttatagagtcattttaaagattttgatgttgtttagaattgcattgttgctctttaattttannnnnnnnaaatatatcaaatat |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45305952 |
aaatatcatcttcatttatagagtcattttaaagattttgatgttgtttagaattgcattgttgctctttaattttattttttttaaatatatcaaatat |
45306051 |
T |
|
| Q |
328 |
agactttgctttccaaagtcttcaactctaaaatcctccaaaacccaactcgaaaacaaaaacttttgagatcnnnnnnnatttgttttgagattttggc |
427 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45306052 |
agactttactttccaaagtcttcaactctaaaatcctccaaaacccaactcgaaaacaaaaacttttgagatctttttttatttgttttgagattttggc |
45306151 |
T |
|
| Q |
428 |
tccctatgct |
437 |
Q |
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| T |
45306152 |
tccctttgct |
45306161 |
T |
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