View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_11 (Length: 420)
Name: NF0825_low_11
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 113 - 408
Target Start/End: Complemental strand, 33276212 - 33275931
Alignment:
| Q |
113 |
gtattcaatggcagtaattattaatttgtnnnnnnnnnnnngacaataattattaattaaatataaaatacttggcaattnnnnnnngttataacatatc |
212 |
Q |
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| T |
33276212 |
gtattcaatggcagtaattattaatttgtaaaaaaaaaaaagacaataattattaattaaatataaaatacttggcaattaaaaaaatttataacatatc |
33276113 |
T |
|
| Q |
213 |
caacnnnnnnnnnnnnctaagaagatcaatgataacaaaaaatcaacaattaaaaagatccaaatgatatatatctaggtagatggtagggtgtttgaat |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33276112 |
caactttttattttttctaagaagatcaatgataacaaaaaatcaacaattaaaaagatccaaatgatat--------------ggtagggtgtttgaat |
33276027 |
T |
|
| Q |
313 |
gcaaaagaagaaaaagaacaaaacagacaatttattgaagaataaatgattaatagattttccgttgaagagaccgaattatctctttttaatatt |
408 |
Q |
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| T |
33276026 |
gcaaaagaagaaaaagaacaaaacagacaatttattgaagaatgaatgattaatatattttccgtagaagagaccgaattatctctttttaatatt |
33275931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 33276267 - 33276203
Alignment:
| Q |
29 |
aatatgtatagaaatagatatatttctaggttttcttctttaagattcaaacaaagtattcaatg |
93 |
Q |
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| T |
33276267 |
aatatgtatagaaatagatatatttctgggttttcttctttaagattcaaacaaagtattcaatg |
33276203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 25407711 - 25407683
Alignment:
| Q |
307 |
ttgaatgcaaaagaagaaaaagaacaaaa |
335 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25407711 |
ttgaatgcaaaagaagaaaaagaacaaaa |
25407683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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