View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_14 (Length: 406)
Name: NF0825_low_14
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 42292043 - 42291875
Alignment:
| Q |
9 |
agcagagagtgcgtttgctgaaggagatgggccgtaatgtactgttgctggagtcgggctttcagttatccaagatattctcatcttgtcttggcccact |
108 |
Q |
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| T |
42292043 |
agcagaaagtgcgtttgctgaaggagatgggccgtaatgtactgttgctggagttgggctttcagttatccaagatattctcatcttgtcttggcccact |
42291944 |
T |
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| Q |
109 |
tgagatatatgtacctacaaggcccacacaatcttattattacatttctttttaaaactcatgctctat |
177 |
Q |
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| T |
42291943 |
tgagatatatgtacctacaaggcccacacaatcttattattacatttctttttaaaactcatgctctat |
42291875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 42291875 - 42291826
Alignment:
| Q |
257 |
tttgtttgcctatcaatcctttatcgtaaggattaaagaggaagacaatc |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42291875 |
tttgtttgcctatcaatcctttatcttaaggattaaagaggaagacaatc |
42291826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 42291828 - 42291784
Alignment:
| Q |
332 |
atcctttagaaccatgaacactacgataactgaatcaaactcaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
42291828 |
atcctttagaaccatgaacactacgataactgaaccagactcaaa |
42291784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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